R Observatory: Metrics for GeometricMorphometricsMix version 0.6.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

GeometricMorphometricsMix

0.6.1.1Package record

Heterogeneous Methods for Shape and Other Multidimensional Data

0packages depend

2.9Kdownloads / year

35.2%test coverage

8/13flavors OK

Overview

About

Maintained by Carmelo FrucianoCRAN page ↗

Tools for geometric morphometric analyses and multidimensional data. Implements methods for morphological disparity analysis using bootstrap and rarefaction, as reviewed in Foote (1997) doi:10.1146/annurev.ecolsys.28.1.129. Includes integration and modularity testing, following Fruciano et al. (2013) doi:10.1371/journal.pone.0069376, using Escoufier's RV coefficient as test statistic as well as two-block partial least squares - PLS, Rohlf and Corti (2000) doi:10.1080/106351500750049806. Also includes vector angle comparisons, orthogonal projection for data correction (Burnaby (1966) doi:10.2307/2528217; Fruciano (2016) doi:10.1007/s00427-016-0537-4), and parallel analysis for dimensionality reduction (Buja and Eyuboglu (1992) doi:10.1207/s15327906mbr2704_2).

Changes in 0.6.1.1

Improved permutation loop in pls(), which now reduces the memory footprint of permutation testing
Added optional parallelism to pls() via the future/future.apply framework. Permutation tests can now exploit multiple workers when a future::plan() with more than one worker is active.
Made Kmultparallel() and its S3 methods (print.parallel_Kmult(), plot.parallel_Kmult(), summary.parallel_Kmult()) defunct. All implementation code and examples have been removed; calling these functions now signals an informative error. Users should migrate to geomorph::physignal() for computing phylogenetic signal (parallel implementation is nowadays trivial).
Moved ape from Depends to Suggests since no remaining exported function uses ape directly.

From NEWS.md in the release

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("GeometricMorphometricsMix", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-geometricmorphometricsmix

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-GeometricMorphometricsMix

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-GeometricMorphometricsMix

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

5NOTE8OK

Check messages

NOTEdependencies in R coder-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64

r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Base package in Suggests/Enhances imported in NAMESPACE:
  ‘utils’

r-devel-windows-x86_64

Base package in Suggests/Enhances imported in NAMESPACE:
  'utils'

CRAN check page ↗

Slowest check: 3.3 min · r-oldrel-macos-x86_64

Status changes

NOTE8 OK, 5 NOTENow
NOTE11 OK, 2 NOTE2026-09-12
OK13 OK2026-08-05
NOTE12 OK, 1 NOTE2026-08-01
OK14 OK2026-04-10
ERROR13 OK, 1 ERROR2026-04-09

Show 1 earlier changeHide 1 earlier change

OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 0.6.1.1

READMEYes · 907 wordsVignettesYes · 2 · dynamicNEWSYes · 100% structured · mentions 0.6.1.1Citation fileNoWebsitenot declared in DESCRIPTION

Help pages: 32 (6 internal)
Examples that run: 100%16 run in a plain check
Exported functions with examples: 67%
Documented parameters: 70%
Return-value docs: 100%
Help pages citing references: 56%

Vignettes (2)

How these are measured

Downloads

2.9K

CRAN downloads in the past year

Rank #12,416 · ~8/day · ~240/mo

Releases R versions

Daily download trend is not available in this view yet.

34130 days

89290 days

2.9K1 year

Compare downloads with other packages →

Also on54 r2u4 autocran

How downloads are counted

Dependencies

Declared dependencies

17 external dependencies (excludes base and recommended)

Installing GeometricMorphometricsMix adds 2 packages (1 with compiled code, 2.7 MB of source tarballs). Heaviest: mclust 2.7 MB, corpcor 22 KB.

Depends (3)

R >= 3.5.0statscorpcor

Imports (2)

methodsmclust

LinkingTo (0)

none

Suggests (17)

ape Morphoutilsgeometry nlshrink lmfMASSclusterGeneration ggplot2 Rmpfr knitr rmarkdown phytools mvMORPH testthat future future.apply

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (1)

Carmelo Fruciano

Author, Maintainer since 0.6.0.1 (2026)

Releases (2)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
0.6.1.1Latest
record
2026-04-17 · current release · diff ↗
0.6.0.1
record
2026-01-27
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2026-01-27
Total releases: 2 / 1 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 3.5.0
Bundled data: 26 KB / 2 files
Download size: 156 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("GeometricMorphometricsMix")

Format

Fruciano, C. (2026). GeometricMorphometricsMix: Heterogeneous Methods for Shape and Other Multidimensional Data (Version 0.6.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.GeometricMorphometricsMix

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for GeometricMorphometricsMix version 0.6.1.1 [Data set]. HJJB, LLC. Data release v2026-10-21. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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