R Observatory: Metrics for BSTZINB version 2.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BSTZINB

2.0.1

Association Among Disease Counts and Socio-Environmental Factors

0packages depend

2.5Kdownloads / year

48.5%test coverage

13/13checks pass

Overview

About

Maintained by Suman MajumderFirst published 2024-10-314 releasesCRAN page ↗GitHub ↗

Estimation of association between disease or death counts (e.g. COVID-19) and socio-environmental risk factors using a zero-inflated Bayesian spatiotemporal model. Non-spatiotemporal models and/or models without zero-inflation are also included for comparison. Functions to produce corresponding maps are also included. See Chakraborty et al. (2022) doi:10.1007/s13253-022-00487-1 for more details on the method.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BSTZINB", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("SumanM47/BSTZINB")

Development version from SumanM47/BSTZINB. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bstzinb

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BSTZINB

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BSTZINB

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 8.7 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.21

48.5%

Coverage · measured lines

100%

Documentation · exports

15

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-02
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 4 earlier snapshots

ERROR2026-04-25
11 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-08
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-07
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 48 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

2.5K

CRAN downloads in the past year

Rank #15,817 · ~7/day · ~211/mo

Releases R versions

Daily download trend is not available in this view yet.

20830 days

68290 days

2.5K1 year

Compare downloads with other packages →

Also on142 r2u22 autocran

Repository

GitHub ↗ sumanm47/bstzinb

0Stars

0Forks

1Open issues

0Open PRs

2Releases

53Commits

3Contributors

License GPL-3.0 · 53 commits · Last activity 2026-03-18

Releases over time

2024-10-31 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

4 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/sumanm47/bstzinb on 2026-08-23.

CRAN release process (3)

cran-comments.mdrevdep/CRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

18 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (15)

BayesLogitbootcoda dplyr ggplot2 gt gtsummary maps matrixcalc MCMCpackmethodsmsm reshape spam viridis

LinkingTo (0)

none

Suggests (5)

knitr rmarkdown CorrMixed ape testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (5)

Maintainer (1)

Suman Majumder

Maintainer, Author, Copyright holder

Authors (2)

Suman Majumder

Maintainer, Author, Copyright holder

Yoon-Bae Jun

Author, Copyright holder

Contributors (3)

Sounak Chakraborty

Contributor

Tanujit Dey

Contributor

Chae-Young Lim

Contributor

Copyright holders (2)

Suman Majumder

Maintainer, Author, Copyright holder

Yoon-Bae Jun

Author, Copyright holder

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.0.1Latest
2025-11-19 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
2.0.0
2025-01-30 · diff ↗
1.0.1
2024-10-31 · diff ↗
1.0.0
2024-10-31
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2024-10-31
Total releases: 4 / 2 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5
Bundled data: 132 KB / 4 files
Download size: 270 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BSTZINB")

Format

Majumder, S., Chakraborty, S., Dey, T., Jun, Y., & Lim, C. (2025). BSTZINB: Association Among Disease Counts and Socio-Environmental Factors (Version 2.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.BSTZINB

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BSTZINB version 2.0.1 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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