BEDMatrix

Extract Genotypes from a PLINK .bed File

v2.0.4 · Sep 6, 2024 · MIT + file LICENSE

Description

A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.

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CRAN Check Status

14 OK

Show all 14 flavors

Flavor	Status	Time
r-devel-linux-x86_64-debian-clang	OK	30.4s
r-devel-linux-x86_64-debian-gcc	OK	24.6s
r-devel-linux-x86_64-fedora-clang	OK	43.8s
r-devel-linux-x86_64-fedora-gcc	OK	42s
r-devel-macos-arm64	OK	12s
r-devel-windows-x86_64	OK	59s
r-oldrel-macos-arm64	OK
r-oldrel-macos-x86_64	OK	38s
r-oldrel-windows-x86_64	OK	62s
r-patched-linux-x86_64	OK	27s
r-release-linux-x86_64	OK	25.6s
r-release-macos-arm64	OK
r-release-macos-x86_64	OK	39s
r-release-windows-x86_64	OK	57s

Check History

OK 14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026

Reverse Dependencies (12)

depends

BGData EBPRS

imports

CoxMK hirisplexr jackstraw mrMLM phers

suggests

genio groupedSurv popkin simtrait symDMatrix

Dependency Network

Version History

new 2.0.4 Mar 10, 2026

updated 2.0.4 ← 2.0.3 diff Sep 5, 2024

updated 2.0.3 ← 2.0.2 diff Jul 7, 2020

updated 2.0.2 ← 2.0.1 diff Mar 10, 2020

updated 2.0.1 ← 1.6.1 diff Dec 15, 2019

updated 1.6.1 ← 1.5.0 diff Jun 20, 2019

updated 1.5.0 ← 1.4.1 diff Apr 24, 2019

updated 1.4.1 ← 1.4.0 diff Aug 5, 2018

updated 1.4.0 ← 1.3.0 diff May 6, 2017

updated 1.3.0 ← 1.2.0 diff Sep 27, 2016

updated 1.2.0 ← 1.1.0 diff Mar 4, 2016

updated 1.1.0 ← 1.0.1 diff Nov 29, 2015

updated 1.0.1 ← 1.0.0 diff Nov 11, 2015

new 1.0.0 Nov 5, 2015