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popkin

Estimate Kinship and FST under Arbitrary Population Structure

v1.3.23 · Jan 6, 2023 · GPL-3
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Description

Provides functions to estimate the kinship matrix of individuals from a large set of biallelic SNPs, and extract inbreeding coefficients and the generalized FST (Wright's fixation index). Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.

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2 NOTE
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r-devel-linux-x86_64-debian-clang NOTE
r-devel-linux-x86_64-debian-gcc NOTE
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 OK
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r-oldrel-windows-x86_64 OK
r-patched-linux-x86_64 OK
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Check details (2 non-OK)
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Check History

NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
NOTE r-devel-linux-x86_64-debian-clang

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.
NOTE r-devel-linux-x86_64-debian-gcc

CRAN incoming feasibility

Maintainer: ‘Alejandro Ochoa <alejandro.ochoa@duke.edu>’

Package CITATION file contains call(s) to old-style personList() or
as.personList().  Please use c() on person objects instead.

Reverse Dependencies (4)

suggests

bnpsd ggmix simfam simtrait

Dependency Network

Dependencies Reverse dependencies RColorBrewer ape bnpsd ggmix simfam simtrait popkin

Version History

new 1.3.23 Mar 10, 2026
updated 1.3.23 ← 1.3.17 diff Jan 6, 2023
updated 1.3.17 ← 1.3.13 diff Jan 26, 2022
updated 1.3.13 ← 1.3.8 diff Jul 26, 2021
updated 1.3.8 ← 1.3.7 diff Feb 10, 2021
updated 1.3.7 ← 1.3.0 diff Feb 8, 2021
updated 1.3.0 ← 1.2.2 diff Dec 17, 2019
updated 1.2.2 ← 1.1.2 diff May 12, 2019
updated 1.1.2 ← 1.0.5 diff Feb 13, 2019
updated 1.0.5 ← 1.0.4 diff Jan 25, 2018
new 1.0.4 Jan 14, 2018