R Observatory: Metrics for genefu version 1.0.9

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2010-08-25. Its history is shown below.

Reason: This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/genefu.html>

Details below reflect version 1.0.9, its last release before removal.

genefu

1.0.9Package record

Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer.

0packages depend

–downloads / year

–test coverage

–flavors OK

Overview

About

Maintained by Benjamin Haibe-KainsCRAN page ↗Website ↗

R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.

Install

BioconductorR (source archive)

BiocManager::install("genefu")

Installs the current Bioconductor release. Requires the BiocManager package.

url <- "https://cran.r-project.org/src/contrib/Archive/genefu/genefu_1.0.9.tar.gz"
pkgFile <- "genefu_1.0.9.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0.9) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 1.0.9

READMENoVignettesNoNEWSNoCitation fileNoWebsiteYes

Help pages: 50includes a package overview page
Examples that run: 100%47 run in a plain check
Exported functions with examples: 94%
Documented parameters: not tracked
Return-value docs: not tracked
Help pages citing references: 100%

How these are measured

Downloads

Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Also on532 r2u1.8K bioconda

How downloads are counted

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (5)

R >= 2.5.0survcomp amap mclust gplots

Imports (0)

none

LinkingTo (0)

none

Suggests (1)

GeneMeta

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

How these are counted

Code & Tests

Datasets

People & History

People (4)

Contributor

Contributor

Contributor

Contributor

Maintainer since 1.0.0

Releases (6)

Pick two releases to compare their code metrics.

1.0.9archived
2010-08-25 · diff ↗
This package is now available from Bioconductor only, see <https://www.bioconductor.org/packages/release/bioc/html/genefu.html>
R
R 1.5.0 released · 2002-04-29
1.0.9
record
1977-08-08 · diff ↗
1.0.8
record
1977-08-08 · diff ↗
1.0.5
record
1977-08-08 · diff ↗
1.0.4
record
1977-08-08 · diff ↗
1.0.1
record
1977-08-08 · diff ↗
1.0.0
record
1977-08-08

Package metadata

First published: 1977-08-08
Total releases: 6
License: GPL (>= 3) OSI
Minimum R: ≥ 2.5.0
Bundled data: 2.1 MB / 23 files

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("genefu")

Format

Haibe-Kains, B., Bontempi, G., Quackenbush, J., & Sotiriou, C. (n.d.). genefu: Relevant Functions for Gene Expression Analysis, Especially in Breast Cancer. (Version 1.0.9) [Computer software]. Retrieved October 23, 2026, from https://CRAN.R-project.org/package=genefu

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for genefu version 1.0.9 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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