ExpressionNormalizationWorkflow
Bioc currentGene Expression Normalization Workflow
Release Lineage
Entered 3.2 · Oct 14, 2015
Current · Requires R 4.6
Description
An extensive, customized expression normalization workflow incorporating Supervised Normalization of Microarryas(SNM), Surrogate Variable Analysis(SVA) and Principal Variance Component Analysis to identify batch effects and remove them from the expression data to enhance the ability to detect the underlying biological signals.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
6 5 exported
Complexity
3.7 avg / 14 max
Call network
6 nodes / 1 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,081
Files
18
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
5
Internal functions
1
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
100%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL (>=3)
License flags
not SPDX, not OSI
History
Versions
22
First release
2015-10-13
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 80%
- References docs
- 83%
Topics
People
Karthikeyan Murugesan
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("ExpressionNormalizationWorkflow")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.