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signifinder

Bioc current

Collection and implementation of public transcriptional cancer signatures

v1.13.0 · software · AGPL-3
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Release Lineage

Entered 3.16 · Nov 2, 2022

Current · Requires R 4.6

1.0 In 8 of 49 releases 3.23

Description

signifinder is an R package for computing and exploring a compendium of tumor signatures. It allows to compute a variety of signatures coming from public literature, based on gene expression values, and return single-sample (-cell/-spot) scores. Currently, signifinder collects more than 70 distinct signatures, relating to multiple tumors and multiple cancer processes.

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Topics

Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › GeneTarget
Software › ResearchField › Immunology › ImmunoOncology
Software › ResearchField › BiomedicalInformatics
Software › Technology › Sequencing › RNASeq
Software › Technology › Microarray
Software › WorkflowStep › ReportWriting
Software › WorkflowStep › Visualization
Software › Technology › SingleCell
Software › Technology › Spatial
Software › BiologicalQuestion › GeneSignaling

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