CluMSID
Bioc currentClustering of MS2 Spectra for Metabolite Identification
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
CluMSID is a tool that aids the identification of features in untargeted LC-MS/MS analysis by the use of MS2 spectra similarity and unsupervised statistical methods. It offers functions for a complete and customisable workflow from raw data to visualisations and is interfaceable with the xmcs family of preprocessing packages.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
31 28 exported
Complexity
4.3 avg / 26 max
Call network
31 nodes / 10 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,129
Files
51
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
28
Internal functions
3
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.07
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-05-02
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 27 (3 internal)
- Examples that run
- 100%22 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 94%
- Return-value docs
- 100%
- Help pages citing references
- 0%
Repository practices
Checks run against github.com/tdepke/clumsid on 2026-10-18.
No development-tooling practices detected in the upstream repository.
Topics
People
- Tobias Depke author maintainer
- Mark Broenstrup thesis advisor
- Raimo Franke contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("CluMSID")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.