esetVis
Bioc currentVisualizations of expressionSet Bioconductor object
Release Lineage
Entered 3.4 · Oct 18, 2016
Current · Requires R 4.6
Description
Utility functions for visualization of expressionSet (or SummarizedExperiment) Bioconductor object, including spectral map, tsne and linear discriminant analysis. Static plot via the ggplot2 package or interactive via the ggvis or rbokeh packages are available.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
18 5 exported
Complexity
10.5 avg / 43 max
Call network
18 nodes / 21 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,419
Files
48
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
11
Internal functions
13
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
20
First release
2016-12-05
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 84%
- Return-value docs
- 100%
- References docs
- 11%
Topics
People
Laure Cougnaud
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("esetVis")Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.