R Observatory: Metrics for samr version 3.0.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

samr

3.0.1

SAM: Significance Analysis of Microarrays

2packages depend

23.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Rob TibshiraniFirst published 2005-06-0111 releasesCRAN page ↗

Significance Analysis of Microarrays for differential expression analysis, RNAseq data and related problems.

Install

R (CRAN)Ubuntu (r2u)

install.packages("samr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-samr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 3.4 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

6

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 97 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 93%
Documented parameters: 90%
Return-value docs: 53%
References docs: 93%

Downloads

23.8K

CRAN downloads in the past year

Rank #2,828 · ~65/day · ~2K/mo

Releases R versions

Daily download trend is not available in this view yet.

77730 days

5.2K90 days

23.8K1 year

Compare downloads with other packages →

Also on439 r2u2.2K bioconda38 c2d4u

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (6)

impute matrixStats shiny shinyFiles openxlsx GSA

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

2direct

0indirect

SMDIC st

Code & Tests

People & History

People (5)

Maintainer (1)

Rob Tibshirani

Author, Maintainer · added in 3.0.1

Authors (5)

Rob Tibshirani

Author, Maintainer · added in 3.0.1

G. Chu

Author

Jun Li

Author · added in 2.0

Balasubramanian Narasimhan

Author

Michael J. Seo

Author · added in 3.0

Listed in earlier versions (3)

T. Hastie

no longer listed · 1.00 to 1.28

R. Tibshirani

no longer listed · 1.00 to 3.0

Seo

no longer listed · 3.0.1

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
3.0.1Latest
2026-04-10 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
3.0
2018-10-16 · diff ↗
unarchivedReturned to CRAN
2018-10-16
archivedRemoved from CRAN
2018-07-20
check problems were not corrected despite reminders
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
R
R 3.2.0 released · 2015-04-16

Show 26 earlier events

R
R 3.1.0 released · 2014-04-10
R
R 3.0.0 released · 2013-04-03
R
R 2.15.0 released · 2012-03-30
R
R 2.14.0 released · 2011-10-31
2.0
2011-06-29 · diff ↗
R
R 2.13.0 released · 2011-04-13
R
R 2.12.0 released · 2010-10-15
R
R 2.11.0 released · 2010-04-22
1.28
2010-03-13 · diff ↗
1.27
2010-01-04 · diff ↗
R
R 2.10.0 released · 2009-10-26
R
R 2.9.0 released · 2009-04-17
R
R 2.8.0 released · 2008-10-20
1.26
2008-09-28 · diff ↗
R
R 2.7.0 released · 2008-04-22
R
R 2.6.0 released · 2007-10-03
1.25
2007-06-07 · diff ↗
R
R 2.5.0 released · 2007-04-24
1.24
2007-04-19 · diff ↗
R
R 2.4.0 released · 2006-10-03
R
R 2.3.0 released · 2006-04-24
R
R 2.2.0 released · 2005-10-06
1.20
2005-10-05 · diff ↗
1.01
2005-07-21 · diff ↗
1.00
2005-06-01
R
R 2.1.0 released · 2005-04-18

Package metadata

First published: 2005-06-01
Total releases: 11 / 21 yrs
License: LGPL
Download size: 3.5 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("samr")

Format

Tibshirani, R., Chu, G., Li, J., Narasimhan, B., & Seo, M. J. (2026). samr: SAM: Significance Analysis of Microarrays (Version 3.0.1) [Computer software]. https://doi.org/10.32614/CRAN.package.samr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for samr version 3.0.1 [Data set]. HJJB, LLC. Data release v2026-08-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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