TileDBArray
Bioc currentUsing TileDB as a DelayedArray Backend
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
27 20 exported
Complexity
2.1 avg / 8 max
Call network
27 nodes / 14 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,649
Files
19
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
20
Internal functions
7
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.30
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
40%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 4
- Examples that run
- 100%3 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 33%
- Help pages citing references
- 0%
- User guide HTML
- Workaround for
TileDBRealizationSinkto properly write higher-dimensional dense arrays.
From inst/NEWS.Rd in the release
Repository practices
3 development-tooling and community-health practices detected across 2 families in the upstream repository
Checks run against github.com/ltla/tiledbarray on 2026-10-18.
The R CMD check workflow runs on Linux, and on R-devel
The repository owner accepts GitHub Sponsors
Topics
Depended on by (1)
Bioconductor (1)
Suggested by (2)
People
- Aaron Lun author maintainer
- Genentech, Inc. copyright holder
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("TileDBArray")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-21, which the citation names so these numbers can be found later. More on citing and the projects behind them.