Rega
Bioc currentR Interface to European Genome-Phenome Archive
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
The European Genome-phenome Archive (EGA) provides long-term storage and controlled sharing of personally identifiable genetic data. The Rega package offers a streamlined and extensible R interface to the EGA API, facilitating the programmatic upload of metadata. GEO-like Excel submission template is provided as a default method of organizing submission metadata.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
87 64 exported
Complexity
4.9 avg / 15 max
Call network
87 nodes / 171 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
21,391
Files
208
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
65
Internal functions
23
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
2.85
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.6
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-06-09
Latest release
2026-06-09
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 89 (24 internal)
- Examples that run
- 99%87 run in a plain check · 1 never run
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 98%
- Help pages citing references
- 0%
- The Rega User Guide HTML
Repository practices
Checks run against github.com/ivanek/rega on 2026-10-21.
No development-tooling practices detected in the upstream repository.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| ega_enums | list | 16 elements | No other package |
Topics
People
- Igor Cervenka author maintainer
- Athimed El Taher author
- Robert Ivanek author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("Rega")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.