RcwlPipelines
Bioc currentBioinformatics pipelines based on Rcwl
Release Lineage
Entered 3.9 · May 3, 2019
Current · Requires R 4.6
Description
A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
17 10 exported
Complexity
3.5 avg / 12 max
Call network
17 nodes / 10 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,039
Files
22
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
7
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.05
testthat edition
–
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.6
System requirements
1 externalnodejs
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
15
First release
2019-09-04
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
8
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 7includes a package overview page
- Examples that run
- 17%1 run in a plain check · 5 never run
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 67%
- Help pages citing references
- 0%
- RcwlPipelines HTML
Repository practices
Checks read the Bioconductor git repository (git.bioconductor.org), branch RELEASE_3_23.
3 practices detected in the Bioconductor git repository
Topics
Depended on by (1)
Bioconductor (1)
People
- Qiang Hu author maintainer
- Shuang Gao author
- Qian Liu author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("RcwlPipelines")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.