MesKit
Bioc currentA tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic alterations
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
MesKit provides commonly used analysis and visualization modules based on mutational data generated by multi-region sequencing (MRS). This package allows to depict mutational profiles, measure heterogeneity within or between tumors from the same patient, track evolutionary dynamics, as well as characterize mutational patterns on different levels. Shiny application was also developed for a need of GUI-based analysis. As a handy tool, MesKit can facilitate the interpretation of tumor heterogeneity and the understanding of evolutionary relationship between regions in MRS study.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
55 24 exported
Complexity
10.3 avg / 43 max
Call network
55 nodes / 57 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
10,764
Files
116
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
24
Internal functions
31
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
3
Dep constraint coverage
13.6%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2021-03-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 97%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 14%
Depended on by (1)
Bioconductor (1)
People
- Mengni Liu author maintainer
- Jianyu Chen author contributor
- Xin Wang author contributor
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("MesKit")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.