MDTS
Bioc currentDetection of de novo deletion in targeted sequencing trios
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
A package for the detection of de novo copy number deletions in targeted sequencing of trios with high sensitivity and positive predictive value.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
20 8 exported
Complexity
1.6 avg / 7 max
Call network
20 nodes / 4 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,176
Files
30
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
8
Internal functions
12
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.5.0
System requirements
–
C++ standard
–
License
Artistic-2.0
License flags
SPDX valid, OSI approved
History
Versions
17
First release
2018-06-19
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 88%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Jack M.. Fu author maintainer
Cite
Cite this package
Run in R for the authors' preferred citation:
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Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
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