HDCytoData
Bioc currentCollection of high-dimensional cytometry benchmark datasets in Bioconductor object formats
Release Lineage
Entered 3.7 · May 1, 2018
Current · Requires R 4.6
Description
Data package containing a set of publicly available high-dimensional cytometry benchmark datasets, formatted into SummarizedExperiment and flowSet Bioconductor object formats, including all required metadata. Row metadata includes sample IDs, group IDs, patient IDs, reference cell population or cluster labels (where available), and labels identifying 'spiked in' cells (where available). Column metadata includes channel names, protein marker names, and protein marker classes (cell type or cell state).
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
1 0 exported
Complexity
1 avg / 1 max
Call network
1 nodes / 0 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,063
Files
39
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
0
Internal functions
1
Recent export changes
Testing
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
Docs
Roxygen coverage
–
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
17
First release
2018-04-30
Latest release
2026-07-14
Avg cadence
183 days
Cold removal rate
100%
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11includes a package overview page
- Examples that run
- 100%10 run in a plain check
- Exported functions with examples
- not tracked
- Documented parameters
- not tracked
- Return-value docs
- not tracked
- Help pages citing references
- 91%
Repository practices
1 development-tooling and community-health practice detected across 1 family in the upstream repository
Checks run against github.com/lmweber/hdcytodata on 2026-10-21.
Datasets
| Name | Class | Size | Also in |
|---|---|---|---|
| metadata | data.frame | 56 × 15 | No other package |
Topics
Depended on by (1)
Bioconductor (1)
Suggested by (5)
People
- Lukas M. Weber author maintainer
- Charlotte Soneson author
Cite
Cite this package
Run in R for the authors' entry:
citation("HDCytoData")The package provides a citation file, so citation() returns the authors' own entry.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-25, which the citation names so these numbers can be found later. More on citing and the projects behind them.