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EMMA

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EMMA: Enrichment Methods Matter for enabling fully reproducible and provenance-aware pathway analysis

v0.99.4 · MIT + file LICENSE
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Description

EMMA is a package that provides a provenance-aware execution framework for functional enrichment analyses. It allows users to run enrichment analyses using existing tools and workflows while explicitly capturing analytical parameters during runtime, and returns the native enrichment results output together with structured metadata.

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Topics

Software
Software › WorkflowStep › Pathways
Software › WorkflowStep › Pathways › GO
Software › WorkflowStep › Pathways › KEGG
Software › BiologicalQuestion › GeneSetEnrichment
Software › ResearchField › Immunology › ImmunoOncology
Software › ResearchField › Transcriptomics
Software › Technology › SingleCell
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › DifferentialExpression

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