DeeDeeExperiment
Bioc currentDeeDeeExperiment: An S4 Class for managing and exploring omics analysis results
Release Lineage
Entered 3.22 · Oct 30, 2025
Current · Requires R 4.6
Description
DeeDeeExperiment is an S4 class extending the SingleCellExperiment class, designed to integrate and manage omics analysis results. It introduces two dedicated slots to store Differential Expression Analysis (DEA) results and Functional Enrichment Analysis (FEA) results, providing a structured approach for downstream analysis.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
29 5 exported
Complexity
6.5 avg / 33 max
Call network
29 nodes / 26 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
8,212
Files
86
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
23
Internal functions
24
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.29
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
2
First release
2025-10-29
Latest release
2026-04-28
Avg cadence
181 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 43%
Topics
Depended on by (1)
Bioconductor (1)
People
- Najla Abassi author maintainer
- Federico Marini author
- Lea Schwarz author
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("DeeDeeExperiment")This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-08-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.