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CrossICC

Bioc removed

An Interactive Consensus Clustering Framework for Multi-platform Data Analysis

v1.6.0 · GPL-3 | file LICENSE
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Release Lineage

Entered 3.10 · Oct 30, 2019

Removed after 3.13 · May 20, 2021

1.0 In 4 of 49 releases 3.23

Description

CrossICC utilizes an iterative strategy to derive the optimal gene set and cluster number from consensus similarity matrix generated by consensus clustering and it is able to deal with multiple cross platform datasets so that requires no between-dataset normalizations. This package also provides abundant functions for visualization and identifying subtypes of cancer. Specially, many cancer-related analysis methods are embedded to facilitate the clinical translation of the identified cancer subtypes.

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Topics

Software
Software › AssayDomain › GeneExpression
Software › BiologicalQuestion › DifferentialExpression
Software › Infrastructure › GUI
Software › BiologicalQuestion › GeneSetEnrichment
Software › StatisticalMethod › Classification
Software › StatisticalMethod › Clustering
Software › StatisticalMethod › FeatureExtraction
Software › StatisticalMethod › Survival
Software › Technology › Microarray
Software › Technology › Sequencing › RNASeq
Software › WorkflowStep › BatchEffect
Software › WorkflowStep › Normalization
Software › WorkflowStep › Preprocessing
Software › WorkflowStep › Visualization

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