BSgenome.Mmusculus.UCSC.mm10.masked
Bioc currentFull masked genome sequences for Mus musculus (UCSC genome mm10, based on GRCm38.p6)
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Entry release not yet recorded. Currently in release 3.23, requires R 4.6.
Description
Full genome sequences for Mus musculus (Mouse) as provided by UCSC (genome mm10, based on GRCm38.p6) and stored in Biostrings objects. The sequences are the same as in BSgenome.Mmusculus.UCSC.mm10, except that each of them has the 2 following masks on top: (1) the mask of assembly gaps (AGAPS mask), and (2) the mask of intra-contig ambiguities (AMB mask).
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citation("BSgenome.Mmusculus.UCSC.mm10.masked")Bioconductor packages have no CRAN DOI. The package landing page is https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10.masked.
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BibTeX
@misc{robservatoryBSgenomeMmusculusUCSCmm10masked,
author = {Balamuta, James Joseph},
title = {{R} {Observatory}: Metrics for {BSgenome.Mmusculus.UCSC.mm10.masked} version 1.4.3},
year = {2026},
publisher = {HJJB, LLC},
url = {https://r-observatory.thecoatlessprofessor.com/bioc/BSgenome.Mmusculus.UCSC.mm10.masked},
note = {Data set. Data release v2026-08-05}
}APA
Balamuta, J. J. (2026). R Observatory: Metrics for BSgenome.Mmusculus.UCSC.mm10.masked version 1.4.3 [Data set]. HJJB, LLC. Data release v2026-08-05. https://r-observatory.thecoatlessprofessor.com/bioc/BSgenome.Mmusculus.UCSC.mm10.maskedRIS
TY - DATA
AU - Balamuta, James Joseph
TI - R Observatory: Metrics for BSgenome.Mmusculus.UCSC.mm10.masked version 1.4.3
PY - 2026
PB - HJJB, LLC
N1 - Data release v2026-08-05
UR - https://r-observatory.thecoatlessprofessor.com/bioc/BSgenome.Mmusculus.UCSC.mm10.masked
ER - In prose
These package metrics were obtained from the R Observatory (Balamuta, 2026), data release v2026-08-05, https://r-observatory.thecoatlessprofessor.com/bioc/BSgenome.Mmusculus.UCSC.mm10.masked.Bound to data release v2026-08-05, which is what makes the numbers on this page reproducible. See how to cite.