|
CTCF
Bioc
|
Genomic coordinates of CTCF binding sites, with orientation
|
annotation |
0.99.14 |
|
HiCcompare
Bioc
|
HiCcompare: Joint normalization and comparative analysis of
multiple Hi-C datasets
|
software |
1.34.0 |
|
SpectralTAD
Bioc
|
SpectralTAD: Hierarchical TAD detection using spectral
clustering
|
software |
1.28.0 |
|
TADCompare
Bioc
|
TADCompare: Identification and characterization of differential
TADs
|
software |
1.22.0 |
|
denyranges
Bioc removed
|
Genomic coordinates of problematic genomic regions
|
|
0.99.1 |
|
excluderanges
Bioc
|
Genomic coordinates of problematic genomic regions
|
annotation |
0.99.11 |
|
multiHiCcompare
Bioc
|
Normalize and detect differences between Hi-C datasets when
replicates of each experimental condition are available
|
software |
1.30.0 |
|
nullranges
Bioc
|
Generation of null ranges via bootstrapping or covariate
matching
|
software |
1.18.0 |
|
nullrangesData
Bioc
|
ExperimentHub datasets for the nullranges package
|
experiment |
1.18.0 |
|
preciseTAD
Bioc
|
preciseTAD: A machine learning framework for precise TAD
boundary prediction
|
software |
1.22.0 |
|
preciseTADhub
Bioc
|
Pre-trained random forest models obtained using preciseTAD
|
experiment |
1.20.0 |
|
scHiCcompare
Bioc
|
Differential Analysis of Single-cell Hi-C Data
|
software |
1.4.0 |