snifter
Bioc currentR wrapper for the python openTSNE library
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
Provides an R wrapper for the implementation of FI-tSNE from the python package openTNSE. See Poličar et al. (2019) <doi:10.1101/731877> and the algorithm described by Linderman et al. (2018) <doi:10.1038/s41592-018-0308-4>.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
9 2 exported
Complexity
2 avg / 8 max
Call network
9 nodes / 4 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
1,082
Files
18
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
2
Internal functions
7
Testing
Has tests
Yes
Test-to-code ratio
0.02
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
2
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 2includes a package overview page
- Examples that run
- 100%2 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 97%
- Return-value docs
- 100%
- Help pages citing references
- 100%
Repository practices
6 development-tooling and community-health practices detected across 4 families in the upstream repository
Checks run against github.com/alanocallaghan/snifter on 2026-10-21.
The R CMD check workflow runs on Linux, macOS and Windows
GitHub Pages site last deployed 2023-05-16
Topics
Depended on by (1)
Bioconductor (1)
People
- Alan O'Callaghan author maintainer
- Aaron Lun author
Cite
Cite this package
Run in R for the authors' entry:
citation("snifter")The package provides a citation file, so citation() returns the authors' own entry.
It points to 10.1101/731877, 10.1038/s41592-018-0308-4.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.