Packages

296 packages on Bioconductor tagged Homo_sapiens or SingleCell, most distinct IPs first

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen	Yunshun Chen	software	19 Oct 2026	32,392	10
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
SingleCellExperiment S4 Classes for Single Cell DataDavide Risso	Davide Risso	software	28 Apr 2026	24,483	25
HDF5Array HDF5 datasets as array-like objects in RHervé Pagès	Hervé Pagès	software	28 Apr 2026	20,537	28
scater Single-Cell Analysis Toolkit for Gene Expression Data in RAlan O'Callaghan	Alan O'Callaghan	software	2 Jul 2026	12,635	78
scran Methods for Single-Cell RNA-Seq Data AnalysisAaron Lun	Aaron Lun	software	28 Apr 2026	10,139	62
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
AUCell AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify cells with specific gene signatures)Gert Hulselmans	Gert Hulselmans	software	29 Apr 2026	4,610	115
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
DropletUtils Utilities for Handling Single-Cell Droplet DataJonathan Griffiths	Jonathan Griffiths	software	27 Sep 2026	4,107	59
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
MAST Model-based Analysis of Single Cell TranscriptomicsAndrew McDavid	Andrew McDavid	software	28 Apr 2026	3,740	56
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi	Wei Shi	software	28 Apr 2026	2,951	8
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
chromVAR Chromatin Variation Across RegionsAlicia Schep	Alicia Schep	software	11 May 2026	2,255	134
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
IlluminaHumanMethylation450kmanifest Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,773	144
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 Annotation for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,677	144
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
zinbwave Zero-Inflated Negative Binomial Model for RNA-Seq DataDavide Risso	Davide Risso	software	28 Apr 2026	1,569	74
splatter Simple Simulation of Single-cell RNA Sequencing DataLuke Zappia	Luke Zappia	software	28 Apr 2026	1,553	61
FDb.InfiniumMethylation.hg19 Annotation package for Illumina Infinium DNA methylation probesTim Triche, Jr.	Tim Triche, Jr.	annotation	no date on record	1,483	77
IlluminaHumanMethylationEPICmanifest Manifest for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,449	144
SC3 Single-Cell Consensus ClusteringVladimir Kiselev	Vladimir Kiselev	software	28 Apr 2026	1,368	92
hugene10sttranscriptcluster.db Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	1,302	43
illuminaHumanv4.db Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)Mark Dunning	Mark Dunning	annotation	no date on record	1,274	43