Packages

287 packages on Bioconductor tagged Homo_sapiens or MassSpectrometry, most distinct IPs first

Homo_sapiens and MassSpectrometry in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
org.Hs.eg.db Genome wide annotation for HumanBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	29,813	42
TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	6,258	75
mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann	Steffen Neumann	software	28 Apr 2026	5,639	15
MSnbase Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto	Laurent Gatto	software	9 Aug 2026	5,521	134
BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,989	60
mzID An mzIdentML parser for RLaurent Gatto	Laurent Gatto	software	28 Apr 2026	4,532	11
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	3,919	75
xcms LC-MS and GC-MS Data AnalysisSteffen Neumann	Steffen Neumann	software	7 Jul 2026	3,537	143
EnsDb.Hsapiens.v86 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	3,389	81
MassSpecWavelet Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno	Sergio Oller Moreno	software	7 Jul 2026	3,096	0
IlluminaHumanMethylation450kanno.ilmn12.hg19 Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	2,852	144
BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,842	58
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
IlluminaHumanMethylation450kmanifest Annotation for Illumina's 450k methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,773	144
pRoloc A unifying bioinformatics framework for spatial proteomicsLisa Breckels	Lisa Breckels	software	28 Apr 2026	1,689	230
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 Annotation for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,677	144
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
MSstats Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics ExperimentsMeena Choi	Meena Choi	software	28 Apr 2026	1,586	100
CAMERA Collection of annotation related methods for mass spectrometry dataSteffen Neumann	Steffen Neumann	software	28 Apr 2026	1,548	157
Rdisop Decomposition of Isotopic PatternsSteffen Neumann	Steffen Neumann	software	28 Apr 2026	1,508	3
FDb.InfiniumMethylation.hg19 Annotation package for Illumina Infinium DNA methylation probesTim Triche, Jr.	Tim Triche, Jr.	annotation	no date on record	1,483	77
IlluminaHumanMethylationEPICmanifest Manifest for Illumina's EPIC methylation arraysKasper Daniel Hansen	Kasper Daniel Hansen	annotation	no date on record	1,449	144
rpx R Interface to the ProteomeXchange RepositoryLaurent Gatto	Laurent Gatto	software	29 Sep 2026	1,329	46
rols An R interface to the Ontology Lookup ServiceSehyun Oh	Sehyun Oh	software	12 Oct 2026	1,304	22
hugene10sttranscriptcluster.db Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	1,302	43
illuminaHumanv4.db Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)Mark Dunning	Mark Dunning	annotation	no date on record	1,274	43
cn.mops cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil	Gundula Povysil	software	28 Apr 2026	1,256	30
MSnID Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics IdentificationsVlad Petyuk	Vlad Petyuk	software	28 Apr 2026	1,236	169