Packages

187 packages on Bioconductor tagged VariantAnnotation or Bayesian or ChipDb, most distinct IPs first

VariantAnnotation, Bayesian and ChipDb in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen	Yunshun Chen	software	19 Oct 2026	32,392	10
VariantAnnotation Annotation of Genetic VariantsBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	9,664	76
pcaMethods A collection of PCA methodsHenning Redestig	Henning Redestig	software	28 Apr 2026	7,385	10
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi	Wei Shi	software	28 Apr 2026	2,951	8
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
baySeq Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud	Samuel Granjeaud	software	28 Apr 2026	1,364	20
hugene10sttranscriptcluster.db Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	1,302	43
puma Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu	Xuejun Liu	software	28 Apr 2026	1,296	55
illuminaHumanv4.db Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)Mark Dunning	Mark Dunning	annotation	no date on record	1,274	43
affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,194	55
limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,165	11
mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,058	43
tigre Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela	Antti Honkela	software	28 Apr 2026	1,013	50
CoGAPS Coordinated Gene Activity in Pattern SetsElana J. Fertig	Elana J. Fertig	software	28 Apr 2026	959	94
hgu219.db Affymetrix Human Genome 219 Plate annotation data (chip hgu219)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	879	43
hgu95a.db Affymetrix Affymetrix HG_U95A Array annotation data (chip hgu95a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	809	43
illuminaHumanv3.db Illumina HumanHT12v3 annotation data (chip illuminaHumanv3)Mark Dunning	Mark Dunning	annotation	no date on record	753	43
hgu133a2.db Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	687	43
GRENITS Gene Regulatory Network Inference Using Time SeriesEdward Morrissey	Edward Morrissey	software	28 Apr 2026	668	31
hu6800.db Affymetrix Affymetrix Hu6800 Array annotation data (chip hu6800)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	666	43
hugene20sttranscriptcluster.db Affymetrix hugene20 annotation data (chip hugene20sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	652	43
rae230a.db Affymetrix Affymetrix RAE230A Array annotation data (chip rae230a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	598	43
hta20transcriptcluster.db Affymetrix hta20 annotation data (chip hta20transcriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	568	43
illuminaHumanv2.db Illumina HumanWG6v2 annotation data (chip illuminaHumanv2)Mark Dunning	Mark Dunning	annotation	no date on record	518	43
lumiHumanAll.db Illumina Human Illumina expression annotation data (chip lumiHumanAll)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	481	43
hgu133b.db Affymetrix Affymetrix HG-U133B Array annotation data (chip hgu133b)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	451	43
hugene11sttranscriptcluster.db Affymetrix hugene11 annotation data (chip hugene11sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	444	43