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Topic: SingleCell or SequencingData

biocViews term

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Release: Release 2.13 (2013)

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35 packages on Bioconductor tagged SingleCell or SequencingData, most distinct IPs first

SingleCell and SequencingData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
pasilla
Data package with per-exon and per-gene read counts of RNA-seq samples of Pasilla knock-down by Brooks et al., Genome Research 2011.Alejandro Reyes		Alejandro Reyesexperiment5 May 20261,554108
RNAseqData.HNRNPC.bam.chr14
Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cellsHervé Pagès		Hervé Pagèsexperiment5 May 20261,0690
pasillaBamSubset
Subset of BAM files from "Pasilla" experimentHervé Pagès		Hervé Pagèsexperiment5 May 20269970
GSVAdata
Data employed in the vignette of the GSVA packageRobert Castelo		Robert Casteloexperiment28 Jul 202695578
yeastNagalakshmi
Yeast genome RNA sequencing data based on Nagalakshmi et. al.Bioconductor Package Maintainer		Bioconductor Package Maintainerexperiment5 May 20265870
harbChIP
Experimental Data Package: harbChIPVJ Carey		VJ Careyexperiment5 May 202658116
parathyroidSE
RangedSummarizedExperiment for RNA-Seq of primary cultures of parathyroid tumors by Haglund et al., J Clin Endocrinol Metab 2012.		no date on record464
JASPAR2014
Data package for JASPARGe Tan		Ge Tanexperiment5 May 202643015
leeBamViews
leeBamViews -- multiple yeast RNAseq samples excerpted from Lee 2009VJ Carey		VJ Careyexperiment5 May 202642858
yeastRNASeq
Yeast RNA-Seq Experimental Data from Lee et al. 2008J. Bullard		J. Bullardexperiment5 May 20264210
curatedOvarianData
Clinically Annotated Data for the Ovarian Cancer TranscriptomeLevi Waldron		Levi Waldronexperiment5 May 20264217
tinesath1probe
Probe sequence data for microarrays of type tinesath1Tine Casneuf		Tine Casneufexperiment5 May 202640442
tweeDEseqCountData
RNA-seq count data employed in the vignette of the tweeDEseq packageDolors Pelegri-Siso		Dolors Pelegri-Sisoexperiment5 May 20263777
GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka		Malgorzata Nowickaexperiment5 May 20263670
bsseqData
Example whole genome bisulfite data for the bsseq packageKasper Daniel Hansen		Kasper Daniel Hansenexperiment5 May 202635090
LungCancerLines
Reads from Two Lung Cancer Cell LinesMichael Lawrence		Michael Lawrenceexperiment5 May 202634229
EatonEtAlChIPseq
ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010Patrick Aboyoun		Patrick Aboyounexperiment5 May 202631069
MEDIPSData
Example data for MEDIPS and QSEA packagesLukas Chavez		Lukas Chavezexperiment5 May 20262990
TBX20BamSubset
Subset of BAM files from the "TBX20" experimentD. Bindreither		D. Bindreitherexperiment5 May 202628930
prebsdata
Data for 'prebs' packageKarolis Uziela		Karolis Uzielaexperiment5 May 20262720
TargetScoreData
TargetScoreDataYue Li		Yue Liexperiment5 May 20262610
GGdata
all 90 hapmap CEU samples, 47K expression, 4mm SNP		no date on record256
MMDiffBamSubset
Example ChIP-Seq data for the MMDiff packageGabriele Schweikert		Gabriele Schweikertexperiment5 May 20262500
flipflop
Fast lasso-based isoform prediction as a flow problem		no date on record243
LiebermanAidenHiC2009
Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)Felix Klein		Felix Kleinexperiment5 May 202623710
Fletcher2013b
Master regulators of FGFR2 signalling and breast cancer riskMauro Castro		Mauro Castroexperiment5 May 2026236153
ListerEtAlBSseq
BS-seq data of H1 and IMR90 cell line excerpted from Lister et al. 2009Mattia Furlan		Mattia Furlanexperiment5 May 2026230159
SomatiCAData
An example cancer whole genome sequencing data for the SomatiCA packageMengjie Chen		Mengjie Chenexperiment5 May 20262230