R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: VariantAnnotation or Bayesian or ExperimentData

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter

First letter

Release: Release 2.12 (2013)

In the current release or not

Bioconductor release

Clear all

51 packages on Bioconductor tagged VariantAnnotation or Bayesian or ExperimentData, most distinct IPs first

VariantAnnotation, Bayesian and ExperimentData in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202644,6566
DESeq2
Differential gene expression analysis based on the negative binomial distributionMichael Love		Michael Lovesoftware28 Apr 202631,84554
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202631,06510
VariantAnnotation
Annotation of Genetic VariantsBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 20269,77176
pcaMethods
A collection of PCA methodsHenning Redestig		Henning Redestigsoftware28 Apr 20267,21410
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,7228
baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,16820
msdata
Various Mass Spectrometry raw data example filesSteffen Neumann		Steffen Neumannexperiment5 May 20261,1620
cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS dataGundula Povysil		Gundula Povysilsoftware28 Apr 20261,07030
puma
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu		Xuejun Liusoftware28 Apr 20261,03355
affylmGUI
GUI for limma Package with Affymetrix MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202696755
limmaGUI
GUI for limma Package With Two Color MicroarraysGordon Smyth		Gordon Smythsoftware28 Apr 202690511
tigre
Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela		Antti Honkelasoftware28 Apr 202682250
CoGAPS
Coordinated Gene Activity in Pattern SetsElana J. Fertig		Elana J. Fertigsoftware28 Apr 202680594
ChAMPdata
Data Packages for ChAMP packageYuan Tian		Yuan Tianexperiment5 May 202679711
EBcoexpress
EBcoexpress for Differential Co-Expression AnalysisJohn A. Dawson		John A. Dawsonsoftware28 Apr 202672915
lmdme
Linear Model decomposition for Designed Multivariate ExperimentsCristobal Fresno		Cristobal Fresnosoftware28 Apr 20266659
ternarynet
Ternary Network EstimationMcCall N. Matthew		McCall N. Matthewsoftware28 Apr 202658326
GRENITS
Gene Regulatory Network Inference Using Time SeriesEdward Morrissey		Edward Morrisseysoftware28 Apr 202653131
FlowSorted.Blood.450k
Illumina HumanMethylation data on sorted blood cell populationsAndrew E Jaffe		Andrew E Jaffeexperiment5 May 2026522144
RforProteomics
Companion package to the 'Using R and Bioconductor for proteomics data analysis' publicationLaurent Gatto		Laurent Gattoexperiment5 May 2026462144
BitSeq
Transcript expression inference and differential expression analysis for RNA-seq data		no date on record426
hapmapsnp6
Sample data - Hapmap SNP 6.0 AffymetrixBenilton Carvalho		Benilton Carvalhoexperiment5 May 20263860
ELMER.data
Data for the ELMER packageTiago Chedraoui Silva		Tiago Chedraoui Silvaexperiment5 May 202634911
oligoData
Dataset samples for the oligo packageBenilton Carvalho		Benilton Carvalhoannotationno date on record31953
davidTiling
Data and analysis scripts for David, Huber et al. yeast tiling array paperWolfgang Huber		Wolfgang Huberexperiment5 May 202631576
ensemblVEP
R Interface to Ensembl Variant Effect Predictor		no date on record314
GeuvadisTranscriptExpr
Data package with transcript expression and bi-allelic genotypes from the GEUVADIS projectMalgorzata Nowicka		Malgorzata Nowickaexperiment5 May 20262950
Hiiragi2013
Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineagesWolfgang Huber		Wolfgang Huberexperiment23 Jun 202628867
pd.atdschip.tiling
Platform Design Info for Affymetrix Atdschip_tilingKristof De Beuf		Kristof De Beufexperiment5 May 202627353