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Topic: SingleCell or Alignment

biocViews term

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Release: Release 2.12 (2013)

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10 packages on Bioconductor tagged SingleCell or Alignment, most distinct IPs first

SingleCell and Alignment in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
Biostrings
Efficient manipulation of biological stringsHervé Pagès		Hervé Pagèssoftware2 Sep 202658,96214
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importBioconductor Package Maintainer		Bioconductor Package Maintainersoftware28 Apr 202630,33728
DECIPHER
Tools for curating, analyzing, and manipulating biological sequencesErik Wright		Erik Wrightsoftware30 Jul 20264,88216
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
motifStack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequenceJianhong Ou		Jianhong Ousoftware28 Apr 20261,782111
QuasR
Quantify and Annotate Short Reads in RMichael Stadler		Michael Stadlersoftware28 Apr 20261,551114
Rbowtie
R bowtie wrapperMichael Stadler		Michael Stadlersoftware28 Apr 20261,2111
segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing dataSamuel Granjeaud		Samuel Granjeaudsoftware28 Apr 20261,17059
gmapR
An R interface to the GMAP/GSNAP/GSTRUCT suiteMichael Lawrence		Michael Lawrencesoftware28 Apr 202671377