Packages

134 packages on Bioconductor tagged VariantAnnotation or Bayesian or cdf, most distinct IPs first

VariantAnnotation, Bayesian and cdf in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	44,656	6
edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen	Yunshun Chen	software	19 Oct 2026	31,065	10
VariantAnnotation Annotation of Genetic VariantsBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	9,771	76
pcaMethods A collection of PCA methodsHenning Redestig	Henning Redestig	software	28 Apr 2026	7,214	10
Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi	Wei Shi	software	28 Apr 2026	2,722	8
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,428	42
baySeq Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud	Samuel Granjeaud	software	28 Apr 2026	1,168	20
hgu95av2cdf hgu95av2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,106	42
puma Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu	Xuejun Liu	software	28 Apr 2026	1,033	55
affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	967	55
limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	905	11
hgu133acdf hgu133acdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	858	42
tigre Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela	Antti Honkela	software	28 Apr 2026	822	50
CoGAPS Coordinated Gene Activity in Pattern SetsElana J. Fertig	Elana J. Fertig	software	28 Apr 2026	805	94
EBcoexpress EBcoexpress for Differential Co-Expression AnalysisJohn A. Dawson	John A. Dawson	software	28 Apr 2026	729	15
mouse4302cdf mouse4302cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	718	42
hgu133a2cdf hgu133a2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	590	42
ternarynet Ternary Network EstimationMcCall N. Matthew	McCall N. Matthew	software	28 Apr 2026	583	26
GRENITS Gene Regulatory Network Inference Using Time SeriesEdward Morrissey	Edward Morrissey	software	28 Apr 2026	531	31
BitSeq Transcript expression inference and differential expression analysis for RNA-seq data			no date on record	426
hgu95acdf hgu95acdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	378	42
soybeancdf soybeancdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	373	42
rat2302cdf rat2302cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	290	42
hugene10stv1cdf hugene10stv1cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	284	42
wheatcdf wheatcdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	283	42
u133x3pcdf u133x3pcdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	280	42
primeviewcdf primeviewcdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	273	42
ricecdf ricecdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	272	42
hgu133bcdf hgu133bcdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	271	42
rhesuscdf rhesuscdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	268	42