Packages

357 packages on Bioconductor tagged VariantAnnotation or Bayesian or AffymetrixChip, most distinct IPs first

VariantAnnotation, Bayesian and AffymetrixChip in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen	Yunshun Chen	software	19 Oct 2026	32,392	10
VariantAnnotation Annotation of Genetic VariantsBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	9,664	76
pcaMethods A collection of PCA methodsHenning Redestig	Henning Redestig	software	28 Apr 2026	7,385	10
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi	Wei Shi	software	28 Apr 2026	2,951	8
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
baySeq Empirical Bayesian analysis of patterns of differential expression in count dataSamuel Granjeaud	Samuel Granjeaud	software	28 Apr 2026	1,364	20
hugene10sttranscriptcluster.db Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	1,302	43
puma Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)Xuejun Liu	Xuejun Liu	software	28 Apr 2026	1,296	55
hgu95av2cdf hgu95av2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,217	42
affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,194	55
limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,165	11
hgu95av2probe Probe sequence data for microarrays of type hgu95av2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,164	42
mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,058	43
tigre Transcription factor Inference through Gaussian process Reconstruction of ExpressionAntti Honkela	Antti Honkela	software	28 Apr 2026	1,013	50
hgu133acdf hgu133acdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	971	42
CoGAPS Coordinated Gene Activity in Pattern SetsElana J. Fertig	Elana J. Fertig	software	28 Apr 2026	959	94
mouse4302cdf mouse4302cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	944	42
hgu133aprobe Probe sequence data for microarrays of type hgu133aBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	939	42
drosophila2probe Probe sequence data for microarrays of type drosophila2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	921	42
EBcoexpress EBcoexpress for Differential Co-Expression AnalysisJohn A. Dawson	John A. Dawson	software	28 Apr 2026	910	15
hgu219.db Affymetrix Human Genome 219 Plate annotation data (chip hgu219)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	879	43
hgu95a.db Affymetrix Affymetrix HG_U95A Array annotation data (chip hgu95a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	809	43
ternarynet Ternary Network EstimationMcCall N. Matthew	McCall N. Matthew	software	28 Apr 2026	731	26
hgu133a2.db Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	687	43
hgu133a2cdf hgu133a2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	675	42
GRENITS Gene Regulatory Network Inference Using Time SeriesEdward Morrissey	Edward Morrissey	software	28 Apr 2026	668	31