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Topic: SingleCell or Proteomics

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Release: Release 2.11 (2012)

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32 packages on Bioconductor tagged SingleCell or Proteomics, most distinct IPs first

SingleCell and Proteomics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
edgeR
Empirical Analysis of Digital Gene Expression Data in RYunshun Chen		Yunshun Chensoftware19 Oct 202632,39210
mzR
parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann		Steffen Neumannsoftware28 Apr 20265,63915
MSnbase
Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto		Laurent Gattosoftware9 Aug 20265,521134
MassSpecWavelet
Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno		Sergio Oller Morenosoftware7 Jul 20263,0960
Rsubread
Mapping, quantification and variant analysis of sequencing dataWei Shi		Wei Shisoftware28 Apr 20262,9518
ChemmineR
Cheminformatics Toolkit for RThomas Girke		Thomas Girkesoftware28 Apr 20261,85465
hpar
Human Protein Atlas in RLaurent Gatto		Laurent Gattosoftware28 Apr 20261,38264
isobar
Analysis and quantitation of isobarically tagged MSMS proteomics dataFlorian P Breitwieser		Florian P Breitwiesersoftware28 Apr 20261,14378
RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysisFrancesco Del Carratore		Francesco Del Carratoresoftware28 Apr 20261,1426
fmcsR
Mismatch Tolerant Maximum Common Substructure SearchingThomas Girke		Thomas Girkesoftware28 Apr 20261,08768
plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka		Norman Pavelkasoftware28 Apr 20261,0479
CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation dataAttila Gabor		Attila Gaborsoftware28 Apr 20261,04462
BRAIN
Baffling Recursive Algorithm for Isotope distributioN calculationsPiotr Dittwald		Piotr Dittwaldsoftware28 Apr 20261,01419
procoil
Prediction of Oligomerization of Coiled Coil ProteinsUlrich Bodenhofer		Ulrich Bodenhofersoftware28 Apr 20261,00626
clippda
A package for the clinical proteomic profiling data analysisStephen Nyangoma		Stephen Nyangomasoftware28 Apr 202693242
PROcess
Ciphergen SELDI-TOF ProcessingXiaochun Li		Xiaochun Lisoftware28 Apr 202689311
PLPE
Local Pooled Error Test for Differential Expression with Paired High-throughput DataSoo-heang Eo		Soo-heang Eosoftware28 Apr 202682310
CNORode
ODE add-on to CellNOptRAurelien Dugourd		Aurelien Dugourdsoftware28 Apr 202677664
synapter
Label-free data analysis pipeline for optimal identification and quantitation		no date on record717
CNORdt
Add-on to CellNOptR: Discretized time treatmentsA. MacNamara		A. MacNamarasoftware28 Apr 202669264
ASEB
Predict Acetylated Lysine SitesLikun Wang		Likun Wangsoftware28 Apr 20266863
SLGI
Synthetic Lethal Genetic Interaction		no date on record626
RpsiXML
R interface to PSI-MI 2.5 files		no date on record621
RCASPAR
A package for survival time prediction based on a piecewise baseline hazard Cox regression model.Douaa Mugahid		Douaa Mugahidsoftware28 Apr 20266180
ScISI
In Silico Interactome		no date on record572
ppiStats
Protein-Protein Interaction Statistical Package		no date on record540
iPAC
Identification of Protein Amino acid Clustering		no date on record498
PCpheno
Phenotypes and cellular organizational units		no date on record485
LPEadj
A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.		no date on record432