Packages
22 packages on Bioconductor tagged SingleCell or MassSpectrometry, most distinct IPs first
SingleCell and MassSpectrometry in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| edgeR Empirical Analysis of Digital Gene Expression Data in RYunshun Chen | Yunshun Chen | software | 19 Oct 2026 | 32,392 | 10 |
| mzR parser for netCDF, mzXML and mzML and mzIdentML files (mass spectrometry data)Steffen Neumann | Steffen Neumann | software | 28 Apr 2026 | 5,639 | 15 |
| MSnbase Base Functions and Classes for Mass Spectrometry and ProteomicsLaurent Gatto | Laurent Gatto | software | 9 Aug 2026 | 5,521 | 134 |
| xcms LC-MS and GC-MS Data AnalysisSteffen Neumann | Steffen Neumann | software | 7 Jul 2026 | 3,537 | 143 |
| MassSpecWavelet Peak Detection for Mass Spectrometry data using wavelet-based algorithmsSergio Oller Moreno | Sergio Oller Moreno | software | 7 Jul 2026 | 3,096 | 0 |
| Rsubread Mapping, quantification and variant analysis of sequencing dataWei Shi | Wei Shi | software | 28 Apr 2026 | 2,951 | 8 |
| CAMERA Collection of annotation related methods for mass spectrometry dataSteffen Neumann | Steffen Neumann | software | 28 Apr 2026 | 1,548 | 157 |
| Rdisop Decomposition of Isotopic PatternsSteffen Neumann | Steffen Neumann | software | 28 Apr 2026 | 1,508 | 3 |
| rols An R interface to the Ontology Lookup ServiceSehyun Oh | Sehyun Oh | software | 12 Oct 2026 | 1,304 | 22 |
| isobar Analysis and quantitation of isobarically tagged MSMS proteomics dataFlorian P Breitwieser | Florian P Breitwieser | software | 28 Apr 2026 | 1,143 | 78 |
| RMassBank Workflow to process tandem MS files and build MassBank recordsRMassBank at Eawag | RMassBank at Eawag | software | 28 Apr 2026 | 1,116 | 175 |
| plgem Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)Norman Pavelka | Norman Pavelka | software | 28 Apr 2026 | 1,047 | 9 |
| BRAIN Baffling Recursive Algorithm for Isotope distributioN calculationsPiotr Dittwald | Piotr Dittwald | software | 28 Apr 2026 | 1,014 | 19 |
| apComplex Estimate protein complex membership using AP-MS protein dataDenise Scholtens | Denise Scholtens | software | 28 Apr 2026 | 1,009 | 48 |
| gaga GaGa hierarchical model for high-throughput data analysisDavid Rossell | David Rossell | software | 28 Apr 2026 | 959 | 17 |
| PROcess Ciphergen SELDI-TOF ProcessingXiaochun Li | Xiaochun Li | software | 28 Apr 2026 | 893 | 11 |
| TargetSearch A package for the analysis of GC-MS metabolite profiling dataAlvaro Cuadros-Inostroza | Alvaro Cuadros-Inostroza | software | 28 Apr 2026 | 839 | 8 |
| flagme Analysis of Metabolomics GC/MS DataMark Robinson | Mark Robinson | software | 28 Apr 2026 | 815 | 165 |
| synapter Label-free data analysis pipeline for optimal identification and quantitation | no date on record | 717 | |||
| MassArray Analytical Tools for MassArray DataReid F. Thompson | Reid F. Thompson | software | 28 Apr 2026 | 684 | 5 |
| Risa Converting experimental metadata from ISA-tab into Bioconductor data structures | no date on record | 562 | |||
| iontree Data management and analysis of ion trees from ion-trap mass spectrometry | no date on record | 178 |