Packages

359 packages on Bioconductor tagged Transcription or AffymetrixChip or Clustering, most distinct IPs first

Transcription, AffymetrixChip and Clustering in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
hgu133plus2.db Affymetrix Affymetrix HG-U133_Plus_2 Array annotation data (chip hgu133plus2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	4,227	43
Mfuzz Soft clustering of omics time series dataMatthias Futschik	Matthias Futschik	software	28 Apr 2026	2,353	16
hgu133a.db Affymetrix Affymetrix HG-U133A Array annotation data (chip hgu133a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,996	43
MLInterfaces Uniform interfaces to R machine learning procedures for data in Bioconductor containersVincent Carey	Vincent Carey	software	28 Apr 2026	1,628	120
hgu133plus2cdf hgu133plus2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,618	42
hgu95av2.db Affymetrix Affymetrix HG_U95Av2 Array annotation data (chip hgu95av2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,605	43
hopach Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)Katherine S. Pollard	Katherine S. Pollard	software	28 Apr 2026	1,337	9
hugene10sttranscriptcluster.db Affymetrix hugene10 annotation data (chip hugene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	1,302	43
EBarrays Unified Approach for Simultaneous Gene Clustering and Differential Expression IdentificationMing Yuan	Ming Yuan	software	28 Apr 2026	1,284	11
made4 Multivariate analysis of microarray data using ADE4Aedin Culhane	Aedin Culhane	software	28 Apr 2026	1,279	38
hgu95av2cdf hgu95av2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,217	42
affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,194	55
hgu95av2probe Probe sequence data for microarrays of type hgu95av2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,164	42
altcdfenvs alternative CDF environments (aka probeset mappings)Laurent Gautier	Laurent Gautier	software	28 Apr 2026	1,113	23
adSplit Annotation-Driven ClusteringClaudio Lottaz	Claudio Lottaz	software	28 Apr 2026	1,072	51
mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,058	43
bioDist Different distance measuresBioconductor Package Maintainer	Bioconductor Package Maintainer	software	28 Apr 2026	1,000	8
ctc Cluster and Tree Conversion.Antoine Lucas	Antoine Lucas	software	28 Apr 2026	979	1
hgu133acdf hgu133acdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	971	42
mouse4302cdf mouse4302cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	944	42
hgu133aprobe Probe sequence data for microarrays of type hgu133aBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	939	42
drosophila2probe Probe sequence data for microarrays of type drosophila2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	921	42
clusterStab Compute cluster stability scores for microarray dataJames W. MacDonald	James W. MacDonald	software	28 Apr 2026	894	7
hgu219.db Affymetrix Human Genome 219 Plate annotation data (chip hgu219)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	879	43
geneRecommender A gene recommender algorithm to identify genes coexpressed with a query set of genesGreg Hather	Greg Hather	software	28 Apr 2026	821	7
hgu95a.db Affymetrix Affymetrix HG_U95A Array annotation data (chip hgu95a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	809	43
MantelCorr Compute Mantel Cluster CorrelationsBrian Steinmeyer	Brian Steinmeyer	software	28 Apr 2026	760	1
hgu133a2.db Affymetrix Affymetrix HG-U133A_2 Array annotation data (chip hgu133a2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	687	43
hgu133a2cdf hgu133a2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	675	42