Packages
204 packages on Bioconductor tagged SingleCell or Genetics or GeneSetEnrichment, most distinct IPs first
SingleCell, Genetics and GeneSetEnrichment in Topics
| Package | Maintainer | Category | Latest version | Distinct IPs a month | Needs |
|---|---|---|---|---|---|
| Biostrings Efficient manipulation of biological stringsHervé Pagès | Hervé Pagès | software | 2 Sep 2026 | 58,962 | 14 |
| limma Linear Models for Microarray and Omics DataGordon Smyth | Gordon Smyth | software | 10 Aug 2026 | 45,965 | 6 |
| BSgenome Software infrastructure for efficient representation of full genomes and their SNPsHervé Pagès | Hervé Pagès | software | 28 Apr 2026 | 14,375 | 57 |
| TxDb.Hsapiens.UCSC.hg19.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 6,258 | 75 |
| BSgenome.Hsapiens.UCSC.hg38 Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 4,989 | 60 |
| TxDb.Hsapiens.UCSC.hg38.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 3,919 | 75 |
| BSgenome.Hsapiens.UCSC.hg19 Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,842 | 58 |
| GOstats Tools for manipulating GO and microarraysBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,437 | 63 |
| Category Category AnalysisBioconductor Package Maintainer | Bioconductor Package Maintainer | software | 28 Apr 2026 | 2,355 | 57 |
| TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,192 | 75 |
| BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 2,152 | 58 |
| safe Significance Analysis of Function and ExpressionLudwig Geistlinger | Ludwig Geistlinger | software | 3 May 2026 | 1,595 | 43 |
| aCGH Classes and functions for Array Comparative Genomic Hybridization dataPeter Dimitrov | Peter Dimitrov | software | 28 Apr 2026 | 1,323 | 17 |
| TxDb.Dmelanogaster.UCSC.dm3.ensGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,161 | 75 |
| BSgenome.Hsapiens.NCBI.GRCh38 Full genome sequences for Homo sapiens (GRCh38)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,017 | 58 |
| BSgenome.Celegans.UCSC.ce2 Full genome sequences for Caenorhabditis elegans (UCSC version ce2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,010 | 58 |
| Homo.sapiens Annotation package for the Homo.sapiens objectBioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 1,006 | 82 |
| TxDb.Mmusculus.UCSC.mm9.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 893 | 75 |
| BSgenome.Hsapiens.UCSC.hg18 Full genome sequences for Homo sapiens (UCSC version hg18)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 888 | 58 |
| logicFS Identification of SNP InteractionsHolger Schwender | Holger Schwender | software | 28 Apr 2026 | 878 | 12 |
| BSgenome.Dmelanogaster.UCSC.dm3 Full genome sequences for Drosophila melanogaster (UCSC version dm3)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 870 | 58 |
| BSgenome.Scerevisiae.UCSC.sacCer2 Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer2)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 850 | 58 |
| TxDb.Hsapiens.UCSC.hg18.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 838 | 75 |
| TxDb.Athaliana.BioMart.plantsmart22 Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 746 | 75 |
| BSgenome.Mmusculus.UCSC.mm39 Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 669 | 58 |
| SNPlocs.Hsapiens.dbSNP144.GRCh38 SNP locations for Homo sapiens (dbSNP Build 144)H. Pagès | H. Pagès | annotation | no date on record | 644 | 60 |
| TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 577 | 75 |
| FDb.UCSC.tRNAs Annotation package for FeatureDb object(s)Biocore Data Team | Biocore Data Team | annotation | no date on record | 575 | 75 |
| TxDb.Celegans.UCSC.ce11.ensGene Annotation package for TxDb object(s)Bioconductor Package Maintainer | Bioconductor Package Maintainer | annotation | no date on record | 572 | 75 |
| PolyPhen.Hsapiens.dbSNP131 PolyPhen Predictions for Homo sapiens dbSNP build 131Valerie Obenchain | Valerie Obenchain | annotation | no date on record | 560 | 77 |