Packages

127 packages on Bioconductor tagged SingleCell or QualityControl or Mus_musculus, most distinct IPs first

SingleCell, QualityControl and Mus_musculus in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
limma Linear Models for Microarray and Omics DataGordon Smyth	Gordon Smyth	software	10 Aug 2026	45,965	6
org.Mm.eg.db Genome wide annotation for MouseBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	13,520	42
affyPLM Methods for fitting probe-level modelsBen Bolstad	Ben Bolstad	software	28 Apr 2026	2,430	22
TxDb.Mmusculus.UCSC.mm10.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,192	75
BSgenome.Mmusculus.UCSC.mm10 Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	2,152	58
affylmGUI GUI for limma Package with Affymetrix MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,194	55
limmaGUI GUI for limma Package With Two Color MicroarraysGordon Smyth	Gordon Smyth	software	28 Apr 2026	1,165	11
OLIN Optimized local intensity-dependent normalisation of two-color microarraysMatthias Futschik	Matthias Futschik	software	28 Apr 2026	1,123	11
altcdfenvs alternative CDF environments (aka probeset mappings)Laurent Gautier	Laurent Gautier	software	28 Apr 2026	1,113	23
mouse4302.db Affymetrix Affymetrix Mouse430_2 Array annotation data (chip mouse4302)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	1,058	43
EnsDb.Mmusculus.v79 Ensembl based annotation packageJohannes Rainer	Johannes Rainer	annotation	no date on record	955	81
mouse4302cdf mouse4302cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	944	42
arrayQuality Assessing array quality on spotted arraysAgnes Paquet	Agnes Paquet	software	28 Apr 2026	942	13
TxDb.Mmusculus.UCSC.mm9.knownGene Annotation package for TxDb object(s)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	893	75
OLINgui Graphical user interface for OLINMatthias Futschik	Matthias Futschik	software	28 Apr 2026	864	17
MANOR CGH Micro-Array NORmalizationPierre Neuvial	Pierre Neuvial	software	28 Apr 2026	855	9
BSgenome.Mmusculus.UCSC.mm39 Full genome sequences for Mus musculus (UCSC genome mm39, based on GRCm39)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	669	58
simpleaffy Very simple high level analysis of Affymetrix data			no date on record	517
mouse4302probe Probe sequence data for microarrays of type mouse4302Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	472	42
rama Robust Analysis of MicroArrays			no date on record	449
illuminaMousev2.db Illumina MouseWG6v2 annotation data (chip illuminaMousev2)Mark Dunning	Mark Dunning	annotation	no date on record	439	43
mogene10sttranscriptcluster.db Affymetrix mogene10 annotation data (chip mogene10sttranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	422	43
Mus.musculus Annotation package for the Mus.musculus objectBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	416	82
affyQCReport QC Report Generation for affyBatch objects			no date on record	401
BSgenome.Mmusculus.UCSC.mm9 Full genome sequences for Mus musculus (UCSC version mm9)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	398	58
illuminaMousev1.db Illumina MouseWG6v1 annotation data (chip illuminaMousev1)Mark Dunning	Mark Dunning	annotation	no date on record	378	43
mouse430a2.db Affymetrix Affymetrix Mouse430A_2 Array annotation data (chip mouse430a2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	376	43
moe430a.db Affymetrix Affymetrix MOE430A Array annotation data (chip moe430a)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	367	43
htmg430pmprobe Probe sequence data for microarrays of type htmg430pmBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	342	42
illuminaMousev1p1.db Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1)Mark Dunning	Mark Dunning	annotation	no date on record	342	43