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Topic: RNASeq or ChipDb or GeneSetEnrichment

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32 packages on Bioconductor tagged RNASeq or ChipDb or GeneSetEnrichment, most distinct IPs first

RNASeq, ChipDb and GeneSetEnrichment in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisMichael Love		Michael Lovesoftware28 Apr 20265,8043
topGO
Enrichment Analysis for Gene OntologyFederico Marini		Federico Marinisoftware28 Apr 20263,22848
tximeta
Transcript Quantification Import with Automatic MetadataMichael Love		Michael Lovesoftware26 Oct 20262,485108
tradeSeq
trajectory-based differential expression analysis for sequencing dataHector Roux de Bezieux		Hector Roux de Bezieuxsoftware28 Apr 20262,46073
TCseq
Time course sequencing data analysisMengjun Wu		Mengjun Wusoftware28 Apr 20261,18172
tricycle
tricycle: Transferable Representation and Inference of cell cycleShijie Zheng		Shijie Zhengsoftware28 Apr 20261,163111
TCC
TCC: Differential expression analysis for tag count data with robust normalization strategiesJianqiang Sun		Jianqiang Sunsoftware28 Apr 20261,15864
TFEA.ChIP
TFEA.ChIP, a Tool Kit for Transcription Factor EnrichmentYosra Berrouayel		Yosra Berrouayelsoftware28 Apr 20261,105106
tidybulk
Brings transcriptomics to the tidyverseStefano Mangiola		Stefano Mangiolasoftware28 Apr 20261,08591
transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and QuantificationArmen R. Karapetyan		Armen R. Karapetyansoftware28 Apr 20261,018148
transcriptogramer
Transcriptional analysis based on transcriptogramsDiego Morais		Diego Moraissoftware28 Apr 202699390
TissueEnrich
Tissue-specific gene enrichment analysisAshish Jain		Ashish Jainsoftware28 Apr 202698178
tidySingleCellExperiment
Brings SingleCellExperiment to the TidyverseStefano Mangiola		Stefano Mangiolasoftware28 Apr 202697992
topconfects
Top Confident Effect SizesPaul Harrison		Paul Harrisonsoftware28 Apr 202686125
tweeDEseq
RNA-seq data analysis using the Poisson-Tweedie family of distributionsDolors Pelegri-Siso		Dolors Pelegri-Sisosoftware28 Apr 202686023
tidySummarizedExperiment
Brings SummarizedExperiment to the TidyverseStefano Mangiola		Stefano Mangiolasoftware28 Apr 202682992
Trendy
Breakpoint analysis of time-course expression dataRhonda Bacher		Rhonda Bachersoftware28 Apr 202679890
tomoda
Tomo-seq data analysisWendao Liu		Wendao Liusoftware28 Apr 202668763
TRESS
Toolbox for mRNA epigenetics sequencing analysisZhenxing Guo		Zhenxing Guosoftware28 Apr 202668375
TREG
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq dataLouise Huuki-Myers		Louise Huuki-Myerssoftware28 Apr 202666735
tidySpatialExperiment
SpatialExperiment with tidy principlesWilliam Hutchison		William Hutchisonsoftware28 Apr 2026643113
txcutr
Transcriptome CUTteRMervin Fansler		Mervin Fanslersoftware28 Apr 202663098
transite
RNA-binding protein motif analysisKonstantin Krismer		Konstantin Krismersoftware28 Apr 202660947
tomoseqr
R Package for Analyzing Tomo-seq DataRyosuke Matsuzawa		Ryosuke Matsuzawasoftware28 Apr 202658695
tadar
Transcriptome Analysis of Differential Allelic RepresentationLachlan Baer		Lachlan Baersoftware28 Apr 2026584151
TMSig
Tools for Molecular SignaturesTyler Sagendorf		Tyler Sagendorfsoftware28 Apr 202653570
TENET
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key transcription factorsRhie Lab at the University of Southern California		Rhie Lab at the University of Southern Californiasoftware28 Apr 2026508210
ttgsea
Tokenizing Text of Gene Set Enrichment AnalysisDongmin Jung		Dongmin Jungsoftware28 Apr 2026506122
tidyomics
Easily install and load the tidyomics ecosystemStefano Mangiola		Stefano Mangiolasoftware28 Apr 2026446206
TaxSEA
Taxon Set Enrichment AnalysisFeargal Ryan		Feargal Ryansoftware28 Apr 20264452