TRESS
Bioc currentToolbox for mRNA epigenetics sequencing analysis
Release Lineage
Entered 3.14 · Oct 27, 2021
Current · Requires R 4.6
Description
This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
76 15 exported
Complexity
3.2 avg / 15 max
Call network
76 nodes / 90 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,620
Files
85
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
15
Internal functions
61
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.1.0
System requirements
–
C++ standard
–
License
GPL-3 + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
10
First release
2021-10-26
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
100%
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 93%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 17%
Topics
Depended on by (1)
Bioconductor (1)
People
- Zhenxing Guo author maintainer
- Hao Wu contributor