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Topic: DimensionReduction or GraphAndNetwork or Epigenetics

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15 packages on Bioconductor tagged DimensionReduction or GraphAndNetwork or Epigenetics, most distinct IPs first

DimensionReduction, GraphAndNetwork and Epigenetics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
TOAST
Tools for the analysis of heterogeneous tissuesZiyi Li		Ziyi Lisoftware28 Apr 20261,454102
TCseq
Time course sequencing data analysisMengjun Wu		Mengjun Wusoftware28 Apr 20261,18172
tricycle
tricycle: Transferable Representation and Inference of cell cycleShijie Zheng		Shijie Zhengsoftware28 Apr 20261,163111
TRONCO
TRONCO, an R package for TRanslational ONCOlogyLuca De Sano		Luca De Sanosoftware28 Apr 20261,02547
transcriptogramer
Transcriptional analysis based on transcriptogramsDiego Morais		Diego Moraissoftware28 Apr 202699390
TreeAndLeaf
Displaying binary trees with focus on dendrogram leavesMauro Castro		Mauro Castrosoftware28 Apr 202687729
tenXplore
ontological exploration of scRNA-seq of 1.3 million mouse neurons from 10x genomicsVJ Carey		VJ Careysoftware28 Apr 2026861124
timeOmics
Time-Course Multi-Omics data integrationAntoine Bodein		Antoine Bodeinsoftware28 Apr 202673388
ternarynet
Ternary Network EstimationMcCall N. Matthew		McCall N. Matthewsoftware28 Apr 202673126
TRESS
Toolbox for mRNA epigenetics sequencing analysisZhenxing Guo		Zhenxing Guosoftware28 Apr 202668375
TMSig
Tools for Molecular SignaturesTyler Sagendorf		Tyler Sagendorfsoftware28 Apr 202653570
tpSVG
Thin plate models to detect spatially variable genesBoyi Guo		Boyi Guosoftware28 Apr 202652577
TENET
R package for TENET (Tracing regulatory Element Networks using Epigenetic Traits) to identify key transcription factorsRhie Lab at the University of Southern California		Rhie Lab at the University of Southern Californiasoftware28 Apr 2026508210
tidyexposomics
Integrated Exposure-Omics Analysis Powered by Tidy PrinciplesJason Laird		Jason Lairdsoftware28 Apr 2026476239
tidysbml
Extract SBML's data into dataframesVeronica Paparozzi		Veronica Paparozzisoftware28 Apr 20263985