timeOmics
Bioc currentTime-Course Multi-Omics data integration
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
timeOmics is a generic data-driven framework to integrate multi-Omics longitudinal data measured on the same biological samples and select key temporal features with strong associations within the same sample group. The main steps of timeOmics are: 1. Plaform and time-specific normalization and filtering steps; 2. Modelling each biological into one time expression profile; 3. Clustering features with the same expression profile over time; 4. Post-hoc validation step.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
70 14 exported
Complexity
3.1 avg / 41 max
Call network
70 nodes / 115 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
4,424
Files
63
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
14
Internal functions
56
Testing & CI
Has tests
Yes
Test-to-code ratio
0.23
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-06-03
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
4
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 96%
- Return-value docs
- 93%
- References docs
- 7%
Topics
Depended on by (1)
Bioconductor (1)
People
- Antoine Bodein author maintainer
- Olivier Chapleur author
- Arnaud Droit author
- Kim-Anh Le Cao author