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Topic: GraphAndNetwork or Network

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17 packages on Bioconductor tagged GraphAndNetwork or Network, most distinct IPs first

GraphAndNetwork and Network in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
STRINGdb
STRINGdb - Protein-Protein Interaction Networks and Functional Enrichment AnalysisDamian Szklarczyk		Damian Szklarczyksoftware27 Oct 20264,45949
SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsAdi Laurentiu Tarca		Adi Laurentiu Tarcasoftware28 Apr 20261,83915
SMITE
Significance-based Modules Integrating the Transcriptome and EpigenomeNeil Ari Wijetunga		Neil Ari Wijetungasoftware28 Apr 2026976151
SANTA
Spatial Analysis of Network AssociationsAlex Cornish		Alex Cornishsoftware28 Apr 202694417
SingleCellSignalR
Cell Signalling Using Single-Cell RNA-seq or Proteomics DataJean-Philippe Villemin		Jean-Philippe Villeminsoftware28 Apr 2026900203
sincell
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq dataMiguel Julia		Miguel Juliasoftware6 May 202685451
SBMLR
SBML-R Interface and Analysis ToolsTomas Radivoyevitch		Tomas Radivoyevitchsoftware28 Apr 20268347
splineTimeR
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstructionHerbert Braselmann		Herbert Braselmannsoftware28 Apr 202681661
SBGNview
"SBGNview: Data Analysis, Integration and Visualization on SBGN Pathways"Weijun Luo		Weijun Luosoftware28 Apr 202679285
syntenet
Inference And Analysis Of Synteny NetworksFabrício Almeida-Silva		Fabrício Almeida-Silvasoftware28 Apr 202678076
SPEM
S-system parameter estimation methodXinyi YANG		Xinyi YANGsoftware28 Apr 202677421
spqn
Spatial quantile normalizationYi Wang		Yi Wangsoftware28 Apr 202674943
spatialHeatmap
spatialHeatmap: Visualizing Spatial Assays in Anatomical Images and Large-Scale Data ExtensionsJianhai Zhang		Jianhai Zhangsoftware13 May 2026617116
sparsenetgls
Using Gaussian graphical structue learning estimation in generalized least squared regression for multivariate normal regressionIrene Zeng		Irene Zengsoftware28 Apr 202659029
SpiecEasi
Sparse Inverse Covariance for Ecological Statistical InferenceZachary Kurtz		Zachary Kurtzsoftware28 Apr 202652573
scGraphVerse
scGraphVerse: A Gene Network Analysis PackageFrancesco Cecere		Francesco Ceceresoftware28 Apr 202641396
SGCP
SGCP: A semi-supervised pipeline for gene clustering using self-training approach in gene co-expression networksNiloofar AghaieAbiane		Niloofar AghaieAbianesoftware2 Mar 2026388