SpiecEasi
Bioc currentSparse Inverse Covariance for Ecological Statistical Inference
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
Estimate networks from the precision matrix of compositional microbial abundance data.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
132 53 exported
Complexity
3.3 avg / 35 max
Call network
132 nodes / 91 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
6,642
Files
113
Compiled share
5.9%
Has compiled src
Yes
Language breakdown
API
Exported functions
50
Internal functions
61
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.09
testthat edition
3
CI present
Yes
CI type
["github-actions"]
PR gated
Yes
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
27.3%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.5.0
System requirements
–
C++ standard
–
License
GPL (>= 3)
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-04-28
Latest release
2026-04-28
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 97%
- Return-value docs
- 90%
- References docs
- 0%
Topics
People
- Zachary Kurtz author maintainer
- Richard Bonneau author
- Emily Miraldi author
- Christian Mueller author
- Laura Tipton contributor