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Topic: AnnotationData or BSgenome or Sequencing

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240 packages on Bioconductor tagged AnnotationData or BSgenome or Sequencing, most distinct IPs first

AnnotationData, BSgenome and Sequencing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
pwalign
Perform pairwise sequence alignmentsHervé Pagès		Hervé Pagèssoftware28 Apr 20269,39215
phyloseq
Handling and analysis of high-throughput microbiome census dataPaul J. McMurdie		Paul J. McMurdiesoftware28 Apr 20268,37966
pathview
a tool set for pathway based data integration and visualizationWeijun Luo		Weijun Luosoftware28 Apr 20265,70650
PCAtools
PCAtools: Everything Principal Components AnalysisJared Andrews		Jared Andrewssoftware28 Apr 20261,88965
PureCN
Copy number calling and SNV classification using targeted short read sequencingMarkus Riester		Markus Riestersoftware28 Apr 20261,356101
pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components ApproachFederico Marini		Federico Marinisoftware28 Apr 20261,192230
podkat
Position-Dependent Kernel Association TestUlrich Bodenhofer		Ulrich Bodenhofersoftware28 Apr 20261,14359
psichomics
Graphical Interface for Alternative Splicing Quantification, Analysis and VisualisationNuno Saraiva-Agostinho		Nuno Saraiva-Agostinhosoftware31 May 20261,070205
PFAM.db
A set of protein ID mappings for PFAMBioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,03842
phantasus
Visual and interactive gene expression analysisAlexey Sergushichev		Alexey Sergushichevsoftware28 Apr 2026992160
Pigengene
Infers biological signatures from gene expression dataHabil Zare		Habil Zaresoftware28 Apr 2026938191
philr
Phylogenetic partitioning based ILR transform for metagenomics dataJustin Silverman		Justin Silvermansoftware28 Apr 202693885
profileplyr
Visualization and annotation of read signal over genomic ranges with profileplyrDoug Barrows		Doug Barrowssoftware7 Jun 2026919203
phenopath
Genomic trajectories with heterogeneous genetic and environmental backgroundsKieran Campbell		Kieran Campbellsoftware28 Apr 202691654
plotgardener
Coordinate-Based Genomic Visualization Package for RNicole Kramer		Nicole Kramersoftware28 Apr 202690798
PCAN
Phenotype Consensus ANalysis (PCAN)Matthew Page		Matthew Pagesoftware28 Apr 202690414
preciseTAD
preciseTAD: A machine learning framework for precise TAD boundary predictionMikhail Dozmorov		Mikhail Dozmorovsoftware28 Apr 2026901175
prebs
Probe region expression estimation for RNA-seq data for improved microarray comparabilityKarolis Uziela		Karolis Uzielasoftware28 Apr 2026896113
primirTSS
Prediction of pri-miRNA Transcription Start SitePumin Li		Pumin Lisoftware28 Apr 2026895184
PROPER
PROspective Power Evaluation for RNAseqHao Wu		Hao Wusoftware28 Apr 202687811
periodicDNA
Set of tools to identify periodic occurrences of k-mers in DNA sequencesJacques Serizay		Jacques Serizaysoftware28 Apr 202686776
pram
Pooling RNA-seq datasets for assembling transcript modelsPeng Liu		Peng Liusoftware28 Apr 202686658
proActiv
Estimate Promoter Activity from RNA-Seq dataJoseph Lee		Joseph Leesoftware28 Apr 2026860116
POMA
Tools for Omics Data AnalysisPol Castellano-Escuder		Pol Castellano-Escudersoftware28 Apr 2026842229
panelcn.mops
CNV detection tool for targeted NGS panel dataGundula Povysil		Gundula Povysilsoftware28 Apr 202683831
PathoStat
PathoStat Statistical Microbiome Analysis PackageSolaiappan Manimaran		Solaiappan Manimaransoftware28 Apr 2026837203
ProteoDisco
Generation of customized protein variant databases from genomic variants, splice-junctions and manual sequencesJob van Riet		Job van Rietsoftware28 Apr 202677599
pogos
PharmacOGenomics Ontology SupportVJ Carey		VJ Careysoftware28 Apr 2026760132
pd.hugene.1.0.st.v1
Platform Design Info for Affymetrix HuGene-1_0-st-v1Benilton Carvalho		Benilton Carvalhoannotationno date on record72653
PAIRADISE
PAIRADISE: Paired analysis of differential isoform expressionQiang Hu		Qiang Husoftware28 Apr 202672336