R Observatory
Menu
Search

Packages

Downloads

Distinct IPs a month

Licence

Licence family offered

Topic: DimensionReduction or GraphAndNetwork or Sequencing

biocViews term

Category

People
AI tools

AI coding tool

AI tool found as

Model named in commits

Code

Source repository on GitHub known

Dates
First letter: L

First letter

Release

In the current release or not

Bioconductor release

Clear all

17 packages on Bioconductor tagged DimensionReduction or GraphAndNetwork or Sequencing, most distinct IPs first

DimensionReduction, GraphAndNetwork and Sequencing in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
limma
Linear Models for Microarray and Omics DataGordon Smyth		Gordon Smythsoftware10 Aug 202645,9656
lefser
R implementation of the LEfSE method for microbiome biomarker discoverySehyun Oh		Sehyun Ohsoftware28 Apr 20261,302176
Linnorm
Linear model and normality based normalization and transformation method (Linnorm)Shun Hang Yip		Shun Hang Yipsoftware28 Apr 20261,08862
LOLA
Locus overlap analysis for enrichment of genomic rangesNathan Sheffield		Nathan Sheffieldsoftware28 Apr 20261,03924
LymphoSeq
Analyze high-throughput sequencing of T and B cell receptorsDavid Coffey		David Coffeysoftware28 Apr 2026854111
loci2path
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLsTianlei Xu		Tianlei Xusoftware28 Apr 202673638
lfa
Logistic Factor Analysis for Categorical DataAlejandro Ochoa		Alejandro Ochoasoftware28 Apr 202672441
LRcell
Differential cell type change analysis using Logistic/linear RegressionWenjing Ma		Wenjing Masoftware28 Apr 202667885
lemur
Latent Embedding Multivariate RegressionConstantin Ahlmann-Eltze		Constantin Ahlmann-Eltzesoftware30 Jul 202667151
levi
Landscape Expression Visualization InterfaceJose Luiz Rybarczyk Filho		Jose Luiz Rybarczyk Filhosoftware28 Apr 202664895
LedPred
Learning from DNA to Predict EnhancersAitor Gonzalez		Aitor Gonzalezsoftware28 Apr 202661963
lineagespot
Detection of SARS-CoV-2 lineages in wastewater samples using next-generation sequencingNikolaos Pechlivanis		Nikolaos Pechlivanissoftware25 Aug 202654381
LimROTS
LimROTS: A Hybrid Method Integrating Empirical Bayes and Reproducibility-Optimized Statistics for Robust Differential Expression AnalysisAli Mostafa Anwar		Ali Mostafa Anwarsoftware26 Oct 2026497115
LACHESIS
Functions used to analyze early tumor evolution from whole genome sequencing dataVerena Körber		Verena Körbersoftware28 Apr 2026447116
lncRna
A Comprehensive Workflow for Long Non-coding RNA Identification and Functional AnalysisJan Pawel Jastrzebski		Jan Pawel Jastrzebskisoftware28 Apr 202634293
LRDE
Differential Expression Analysis with Long Read RNA-Seq DataZiyang Liu		Ziyang Liusoftware27 Sep 202626825
linkSet
Base Classes for Storing Genomic Link DataGilbert Han		Gilbert Hansoftware28 Apr 2026208