LRDE
Bioc currentDifferential Expression Analysis with Long Read RNA-Seq Data
Release Lineage
Entered 3.23 · Apr 29, 2026
Current · Requires R 4.6
Description
Provides hurdle negative binomial models for differential expression analysis with long-read RNA-Seq data.
None published for Bioconductor
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
16 9 exported
Complexity
9.9 avg / 28 max
Call network
16 nodes / 9 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
2,915
Files
22
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
7
Recent export changes
Testing
Has tests
Yes
Test-to-code ratio
0.01
testthat edition
3
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.6.0
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
1
First release
2026-09-24
Latest release
2026-09-24
Avg cadence
–
Cold removal rate
–
Dep drift
0
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Help pages
- 11 (1 internal)includes a package overview page
- Examples that run
- 100%10 run in a plain check
- Exported functions with examples
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- Help pages citing references
- 0%
- Introduction to LRDE HTML
- Corrected README function names to use hurdle.LRT() and hurdle.Wald.Test().
From NEWS in the release
Repository practices
Checks run against github.com/ziyang773/lrde on 2026-10-21.
No development-tooling practices detected in the upstream repository.
Topics
People
- Ziyang Liu author maintainer
- Hongxu Ding author funder
- Xiaoxiao Sun author funder
- Ziyuan Wang author funder
Cite
Cite this package
Run in R for the authors' preferred citation:
citation("LRDE")This package has no citation file, so citation() returns this entry built from DESCRIPTION.
Cite the R Observatory
For a number measured here: a download total, a coverage figure, an archival date.
From data release v2026-10-24, which the citation names so these numbers can be found later. More on citing and the projects behind them.