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Topic: MassSpectrometry or DNAMethylation or Proteomics

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36 packages on Bioconductor tagged MassSpectrometry or DNAMethylation or Proteomics, most distinct IPs first

MassSpectrometry, DNAMethylation and Proteomics in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
ChemmineR
Cheminformatics Toolkit for RThomas Girke		Thomas Girkesoftware28 Apr 20261,85465
ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPICYuan Tian		Yuan Tiansoftware28 Apr 20261,643266
CAMERA
Collection of annotation related methods for mass spectrometry dataSteffen Neumann		Steffen Neumannsoftware28 Apr 20261,548157
Cardinal
A mass spectrometry imaging toolbox for statistical analysisKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 20261,40531
CATALYST
Cytometry dATa anALYSis ToolsHelena L. Crowell		Helena L. Crowellsoftware28 Apr 20261,265176
CompoundDb
Creating and Using (Chemical) Compound Annotation DatabasesJohannes Rainer		Johannes Rainersoftware28 Apr 20261,108104
ChemmineOB
R interface to a subset of OpenBabel functionalitiesThomas Girke		Thomas Girkesoftware28 Apr 20261,0478
CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation dataAttila Gabor		Attila Gaborsoftware28 Apr 20261,04462
cleaver
Cleavage of Polypeptide SequencesSebastian Gibb		Sebastian Gibbsoftware28 Apr 20261,03815
COCOA
Coordinate Covariation AnalysisJohn Lawson		John Lawsonsoftware28 Apr 2026965126
CNORfeeder
Integration of CellNOptR to add missing linksAttila Gabor		Attila Gaborsoftware28 Apr 202694563
conumee
Enhanced copy-number variation analysis using Illumina DNA methylation arraysVolker Hovestadt		Volker Hovestadtsoftware28 Apr 2026934149
clippda
A package for the clinical proteomic profiling data analysisStephen Nyangoma		Stephen Nyangomasoftware28 Apr 202693242
cydar
Using Mass Cytometry for Differential Abundance AnalysesAaron Lun		Aaron Lunsoftware28 Apr 202690188
customProDB
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics searchXiaojing Wang		Xiaojing Wangsoftware13 Jan 2026819103
cosmiq
cosmiq - COmbining Single Masses Into QuantitiesDavid Fischer		David Fischersoftware28 Apr 2026792146
CNORode
ODE add-on to CellNOptRAurelien Dugourd		Aurelien Dugourdsoftware28 Apr 202677664
cbaf
Automated functions for comparing various omic data from cbioportal.orgArman Shahrisa		Arman Shahrisasoftware28 Apr 2026748156
coMethDMR
Accurate identification of co-methylated and differentially methylated regions in epigenome-wide association studiesFernanda Veitzman		Fernanda Veitzmansoftware28 Apr 2026741128
CausalR
Causal network analysis methodsGlyn Bradley		Glyn Bradleysoftware28 Apr 202672217
CardinalIO
Read and write mass spectrometry imaging filesKylie Ariel Bemis		Kylie Ariel Bemissoftware28 Apr 202672128
CNORdt
Add-on to CellNOptR: Discretized time treatmentsA. MacNamara		A. MacNamarasoftware28 Apr 202669264
cliqueMS
Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics DataOriol Senan Campos		Oriol Senan Campossoftware28 Apr 2026689147
cosmosR
COSMOS (Causal Oriented Search of Multi-Omic Space)Aurélien Dugourd		Aurélien Dugourdsoftware28 Apr 2026684105
CTexploreR
Explores Cancer Testis GenesAxelle Loriot		Axelle Loriotsoftware28 Apr 2026676103
censcyt
Differential abundance analysis with a right censored covariate in high-dimensional cytometryReto Gerber		Reto Gerbersoftware28 Apr 2026646181
cytoKernel
Differential expression using kernel-based score testTusharkanti Ghosh		Tusharkanti Ghoshsoftware28 Apr 202664275
CONSTANd
Data normalization by matrix rakingDirk Valkenborg		Dirk Valkenborgsoftware28 Apr 20266280
cytoMEM
Marker Enrichment Modeling (MEM)Jonathan Irish		Jonathan Irishsoftware28 Apr 202661127
CytoGLMM
Conditional Differential Analysis for Flow and Mass Cytometry ExperimentsChristof Seiler		Christof Seilersoftware28 Apr 2026602184