Packages

40 packages on Bioconductor tagged AffymetrixChip or DimensionReduction, most distinct IPs first

AffymetrixChip and DimensionReduction in Topics

Package	Maintainer	Category	Latest version	Distinct IPs a month	Needs
CoGAPS Coordinated Gene Activity in Pattern SetsElana J. Fertig	Elana J. Fertig	software	28 Apr 2026	959	94
CellTrails Reconstruction, visualization and analysis of branching trajectoriesDaniel Ellwanger	Daniel Ellwanger	software	28 Apr 2026	868	69
cellity Quality Control for Single-Cell RNA-seq DataTomislav Ilicic	Tomislav Ilicic	software	28 Apr 2026	861	68
corral Correspondence Analysis for Single Cell DataLauren Hsu	Lauren Hsu	software	28 Apr 2026	727	70
combi Compositional omics model based visual integrationStijn Hawinkel	Stijn Hawinkel	software	28 Apr 2026	708	88
CelliD Unbiased Extraction of Single Cell gene signatures using Multiple Correspondence AnalysisAkira Cortal	Akira Cortal	software	3 Nov 2025	690	190
ccImpute ccImpute: an accurate and scalable consensus clustering based approach to impute dropout events in the single-cell RNA-seq data (https://doi.org/10.1186/s12859-022-04814-8)Marcin Malec	Marcin Malec	software	28 Apr 2026	622	40
chevreulShiny Tools for managing SingleCellExperiment objects as projectsKevin Stachelek	Kevin Stachelek	software	28 Apr 2026	593	266
CytoMDS Low Dimensions projection of cytometry samplesPhilippe Hauchamps	Philippe Hauchamps	software	28 Apr 2026	586	192
chevreulProcess Tools for managing SingleCellExperiment objects as projectsKevin Stachelek	Kevin Stachelek	software	28 Apr 2026	552	187
ClustAll ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseasesAsier Ortega-Legarreta	Asier Ortega-Legarreta	software	28 Apr 2026	540	193
crumblr Count ratio uncertainty modeling base linear regressionGabriel Hoffman	Gabriel Hoffman	software	21 Jul 2026	493	158
Coralysis Coralysis sensitive identification of imbalanced cell types and states in single-cell data via multi-level integrationAntónio Sousa	António Sousa	software	28 Apr 2026	467	132
chevreulPlot Plots used in the chevreulPlot packageKevin Stachelek	Kevin Stachelek	software	28 Apr 2026	406	229
clariomdhumantranscriptcluster.db Affymetrix clariomdhuman annotation data (chip clariomdhumantranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	369	43
canine2probe Probe sequence data for microarrays of type canine2Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	368	42
chickenprobe Probe sequence data for microarrays of type chickenBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	358	42
CellMentor Supervised Non-negative Matrix Factorization for Dimensional Reduction in Single-Cell AnalysisEkaterina Petrenko	Ekaterina Petrenko	software	25 May 2026	358	190
clariomshumantranscriptcluster.db Affymetrix clariomshuman annotation data (chip clariomshumantranscriptcluster)Biocore Package Maintainer	Biocore Package Maintainer	annotation	no date on record	340	43
canine2.db Affymetrix Affymetrix Canine_2 Array annotation data (chip canine2)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	338	43
chicken.db Affymetrix Affymetrix Chicken Array annotation data (chip chicken)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	337	43
chickencdf chickencdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	336	42
cottonprobe Probe sequence data for microarrays of type cottonBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	334	42
canineprobe Probe sequence data for microarrays of type canineBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	334	42
citrusprobe Probe sequence data for microarrays of type citrusBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	330	42
canine2cdf canine2cdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	329	42
celegansprobe Probe sequence data for microarrays of type celegansBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	329	42
canine.db Affymetrix Affymetrix Canine Array annotation data (chip canine)Bioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	318	43
cottoncdf cottoncdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	313	42
citruscdf citruscdfBioconductor Package Maintainer	Bioconductor Package Maintainer	annotation	no date on record	310	42