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Topic: RNASeq or Homo_sapiens

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37 packages on Bioconductor tagged RNASeq or Homo_sapiens, most distinct IPs first

RNASeq and Homo_sapiens in Topics

PackageMaintainerCategoryLatest versionDistinct IPs a monthNeeds
batchelor
Single-Cell Batch Correction MethodsAaron Lun		Aaron Lunsoftware28 Apr 20265,72056
BSgenome.Hsapiens.UCSC.hg38
Full genomic sequences for Homo sapiens (UCSC genome hg38)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record4,98960
BSgenome.Hsapiens.UCSC.hg19
Full genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record2,84258
ballgown
Flexible, isoform-level differential expression analysisJack Fu		Jack Fusoftware4 Nov 20251,84487
BASiCS
Bayesian Analysis of Single-Cell Sequencing dataCatalina Vallejos		Catalina Vallejossoftware29 Apr 20261,206129
bambu
Context-Aware Transcript Quantification from Long Read RNA-Seq dataYing Chen		Ying Chensoftware28 Apr 20261,06793
BSgenome.Hsapiens.NCBI.GRCh38
Full genome sequences for Homo sapiens (GRCh38)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record1,01758
BgeeCall
Automatic RNA-Seq present/absent gene expression calls generationJulien Wollbrett		Julien Wollbrettsoftware7 Jul 2026961126
bacon
Controlling bias and inflation in association studies using the empirical null distributionMaarten van Iterson		Maarten van Itersonsoftware28 Apr 202694033
BUSpaRse
kallisto | bustools R utilitiesLambda Moses		Lambda Mosessoftware28 Apr 2026916121
Basic4Cseq
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq dataCarolin Walter		Carolin Waltersoftware29 Apr 202689661
BSgenome.Hsapiens.UCSC.hg18
Full genome sequences for Homo sapiens (UCSC version hg18)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record88858
BioTIP
BioTIP: An R package for characterization of Biological Tipping-PointFelix Yu		Felix Yusoftware28 Apr 202688273
blacksheepr
Outlier Analysis for pairwise differential comparisonRugglesLab		RugglesLabsoftware28 Apr 2026827124
BatchQC
Batch Effects Quality Control SoftwareYaoan Leng		Yaoan Lengsoftware15 Sep 2026818245
biotmle
Targeted Learning with Moderated Statistics for Biomarker DiscoveryNima Hejazi		Nima Hejazisoftware28 Jul 202679493
BUMHMM
Computational pipeline for computing probability of modification from structure probing experiment dataAlina Selega		Alina Selegasoftware28 Apr 2026791122
BANDITS
BANDITS: Bayesian ANalysis of DIfferenTial SplicingSimone Tiberi		Simone Tiberisoftware25 Oct 202677846
bayNorm
Single-cell RNA sequencing data normalizationWenhao Tang		Wenhao Tangsoftware28 Apr 202677350
BADER
Bayesian Analysis of Differential Expression in RNA Sequencing DataAndreas Neudecker		Andreas Neudeckersoftware28 Apr 20266820
BulkSignalR
Infer Ligand-Receptor Interactions from bulk expression (transcriptomics/proteomics) data, or spatial transcriptomicsJean-Philippe Villemin		Jean-Philippe Villeminsoftware28 Apr 2026680201
BPRMeth
Model higher-order methylation profilesChantriolnt-Andreas Kapourani		Chantriolnt-Andreas Kapouranisoftwareno date on record606
blase
Bulk Linking Analysis for Single-cell ExperimentsAndrew McCluskey		Andrew McCluskeysoftware11 Aug 2026579190
BASiCStan
Stan implementation of BASiCSAlan O'Callaghan		Alan O'Callaghansoftware2 Jul 2026575155
BreastSubtypeR
Cohort-aware methods for intrinsic molecular subtyping of breast cancerQiao Yang		Qiao Yangsoftware21 Oct 202655579
broadSeq
broadSeq : for streamlined exploration of RNA-seq dataRishi Das Roy		Rishi Das Roysoftware28 Apr 2026553238
BSgenome.Hsapiens.1000genomes.hs37d5
1000genomes Reference Genome Sequence (hs37d5)Julian Gehring		Julian Gehringannotationno date on record48658
BSgenome.Hsapiens.UCSC.hg38.masked
Full masked genomic sequences for Homo sapiens (UCSC version hg38)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record47661
BSgenome.Hsapiens.UCSC.hg19.masked
Full masked genome sequences for Homo sapiens (UCSC version hg19, based on GRCh37.p13)Bioconductor Package Maintainer		Bioconductor Package Maintainerannotationno date on record46159
biotmleData
Example experimental microarray data set for the "biotmle" R packageNima Hejazi		Nima Hejaziexperiment5 May 20262480