R Observatory: Metrics for zeitgebr version 0.3.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

zeitgebr

0.3.6

Analysis of Circadian Behaviours

4packages depend

5.7Kdownloads / year

57.9%test coverage

7/13checks pass

Overview

About

Maintained by Quentin GeissmannFirst published 2018-05-165 releasesCRAN page ↗GitHub ↗

Use behavioural variables to compute period, rhythmicity and other circadian parameters. Methods include computation of chi square periodograms (Sokolove and Bushell (1978) DOI:10.1016/0022-5193(78)90022-X), Lomb-Scargle periodograms (Lomb (1976) DOI:10.1007/BF00648343, Scargle (1982) DOI:10.1086/160554, Ruf (1999) DOI:10.1076/brhm.30.2.178.1422), and autocorrelation-based periodograms.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("zeitgebr", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("rethomics/zeitgebr")

Development version from rethomics/zeitgebr. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-zeitgebr

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-zeitgebr

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-zeitgebr

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

6NOTE7OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc
NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc
NOTE r-patched-linux-x86_64
NOTE r-release-linux-x86_64

Slowest check: 16.9 min · r-release-macos-x86_64

Code health

Yes

Tests · ratio 0.32

57.9%

Coverage · measured lines

100%

Documentation · exports

5

Dependencies · direct

Check history

NOTE2026-06-09
7 OK · 6 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
7 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-05-01
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 80%
Return-value docs: 80%
References docs: 83%

Downloads

5.7K

CRAN downloads in the past year

Rank #12,416 · ~16/day · ~476/mo

Releases R versions

Daily download trend is not available in this view yet.

19630 days

80390 days

5.7K1 year

Compare downloads with other packages →

Also on100 r2u35 autocran

Repository

GitHub ↗ rethomics/zeitgebr

14Stars

7Forks

4Open issues

0Open PRs

1Releases

1,181Commits

3Contributors

1,181 commits · Last activity 2025-04-21 · 0% stars, 30d

Stars over time

2025-07-15 · 142026-07-07 · 14

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/rethomics/zeitgebr on 2026-08-16.

Continuous integration (1)

Travis CI

Reproducibility and dev environment (1)

Makefile

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Show all practices

Git structural (1)

Submodules

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

11 external dependencies (excludes base and recommended)

Depends (2)

R >= 3.00behavr

Imports (4)

data.table lomb pracma WaveletComp

LinkingTo (0)

none

Suggests (6)

testthat covr knitr ggetho damr xsp

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

4direct

0indirect

phase damr ggetho scopr

Code & Tests

People & History

People (2)

Maintainer (1)

Quentin Geissmann

Author, Maintainer

Authors (2)

Quentin Geissmann

Author, Maintainer

Luis Garcia

Author

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.3.6Latest
2025-04-21 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
0.3.5
2020-04-25 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.3.3
2018-06-23 · diff ↗
0.3.2
2018-05-18 · diff ↗
0.3.1
2018-05-16
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-05-16
Total releases: 5 / 8 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.00
Bundled data: 320 KB / 1 file
Download size: 208 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("zeitgebr")

Format

Geissmann, Q., & Garcia, L. (2025). zeitgebr: Analysis of Circadian Behaviours (Version 0.3.6) [Computer software]. https://doi.org/10.32614/CRAN.package.zeitgebr

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for zeitgebr version 0.3.6 [Data set]. HJJB, LLC. Data release v2026-08-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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