R Observatory: Metrics for xLLiM version 2.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

xLLiM

2.3.1Package record

High Dimensional Locally-Linear Mapping

0packages dependsuggested by 1

25Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Emeline PerthameCRAN page ↗

Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) DOI:10.1007/s11222-014-9461-5) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) DOI:10.1016/j.jmva.2017.09.009) based on a mixture of Generalized Student distributions. The methods also include BLLiM (see Blein--Nicolas et al (2024) DOI:10.1093/jrsssc/qlae012) which is an extension of GLLiM with a sparse block diagonal structure for large covariance matrices (particularly interesting for transcriptomic data).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("xLLiM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-xllim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-xLLiM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-xLLiM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 3.0 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-10-20
ERROR12 OK, 1 ERROR2026-10-12
OK13 OK2026-10-09
ERROR12 OK, 1 ERROR2026-10-08
OK13 OK2026-08-04

Show 18 earlier changesHide 18 earlier changes

ERROR11 OK, 1 NOTE, 1 ERROR2026-08-01
OK13 OK2026-07-10
ERROR12 OK, 1 ERROR2026-07-04
OK13 OK2026-07-03
ERROR12 OK, 1 ERROR2026-06-27
OK13 OK2026-06-24
ERROR12 OK, 1 ERROR2026-06-22
OK13 OK2026-06-19
ERROR12 OK, 1 ERROR2026-06-17
OK13 OK2026-06-01
ERROR12 OK, 1 ERROR2026-05-28
OK13 OK2026-05-27
ERROR12 OK, 1 ERROR2026-05-24
OK13 OK2026-05-04
ERROR12 OK, 1 ERROR2026-04-28
OK14 OK2026-03-19
ERROR13 OK, 1 ERROR2026-03-12
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.3.1

READMEYes · 102 wordsVignettesNoNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 11includes a package overview page
Examples that run: 82%9 run in a plain check · 2 hold no code
Exported functions with examples: 100%
Documented parameters: 100%
Return-value docs: 100%
Help pages citing references: 73%

How these are measured

Downloads

25K

CRAN downloads in the past year

Rank #2,736 · ~69/day · ~2.1K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.8K30 days

5.5K90 days

25K1 year

Compare downloads with other packages →

Also on85 r2u5 autocran

How downloads are counted

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Installing xLLiM adds 27 packages (13 with compiled code, 17 MB of source tarballs). Heaviest: igraph 4.8 MB, glmnet 2.7 MB, Rcpp 1.8 MB. 1 more not on CRAN is not measured.

Depends (0)

none

Imports (12)

MASSabind corpcorMatrixigraph capushe glmnet randomForest e1071 mda progress mixOmics

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Suggested by 1

Suggests, most downloaded first

Infusion

How these are counted

Code & Tests

Datasets

People & History

People (5)

Emeline Perthame

Author, Maintainer since 1.0 (2016)

Antoine Deleforge

Author

Emilie Devijver

Author · added in 2.0

Florence Forbes

Author

Melina Gallopin

Author · added in 2.0

Releases (7)

Pick two releases to compare their code metrics.

R
R 4.6.0 released · 2026-04-24
2.3.1Latest
record
2026-03-02 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.3
record
2023-10-27 · diff ↗ ·
added 1 export
preprocess_data
2.2.1
record
2023-09-11 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.2
record
2021-01-04 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
2.1
record
2017-05-23 · diff ↗
2.0
record
2017-05-16 · diff ↗ ·
added 1 export
bllim
R
R 3.4.0 released · 2017-04-21

Show 2 earlier eventsHide 2 earlier events

1.0
record
2016-12-05
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-12-05
Total releases: 7 / 10 yrs
License: GPL (>= 2) OSI
Bundled data: 54 KB / 3 files
Download size: 92 KB

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("xLLiM")

Format

Perthame, E., Deleforge, A., Devijver, E., Forbes, F., & Gallopin, M. (2026). xLLiM: High Dimensional Locally-Linear Mapping (Version 2.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.xLLiM

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for xLLiM version 2.3.1 [Data set]. HJJB, LLC. Data release v2026-10-22. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-22, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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