R Observatory: Metrics for xLLiM version 2.3.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

xLLiM

2.3.1

High Dimensional Locally-Linear Mapping

1packages depend

29.5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Emeline PerthameFirst published 2016-12-057 releasesCRAN page ↗

Provides a tool for non linear mapping (non linear regression) using a mixture of regression model and an inverse regression strategy. The methods include the GLLiM model (see Deleforge et al (2015) DOI:10.1007/s11222-014-9461-5) based on Gaussian mixtures and a robust version of GLLiM, named SLLiM (see Perthame et al (2016) DOI:10.1016/j.jmva.2017.09.009) based on a mixture of Generalized Student distributions. The methods also include BLLiM (see Blein--Nicolas et al (2024) DOI:10.1093/jrsssc/qlae012) which is an extension of GLLiM with a sparse block diagonal structure for large covariance matrices (particularly interesting for transcriptomic data).

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("xLLiM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-xllim

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-xLLiM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-xLLiM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.0 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

12

Dependencies · direct

Check history

OK2026-08-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-08-01
11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-07-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-04
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-07-03
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 14 earlier snapshots

ERROR2026-06-27
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-24
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-22
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-19
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-17
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-06-01
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-28
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-27
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-24
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-04
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-28
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-19
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-12
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 102 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 73%

Downloads

29.5K

CRAN downloads in the past year

Rank #2,645 · ~81/day · ~2.5K/mo

Releases R versions

Daily download trend is not available in this view yet.

2.4K30 days

6.6K90 days

29.5K1 year

Compare downloads with other packages →

Also on116 r2u21 autocran

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (12)

MASSabind corpcorMatrixigraph capushe glmnet randomForest e1071 mda progress mixOmics

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

1direct

0indirect

Infusion

Code & Tests

Datasets

People & History

People (5)

Maintainer (1)

Emeline Perthame

Author, Maintainer · added in 2.3.1

Authors (5)

Emeline Perthame

Author, Maintainer · added in 2.3.1

Antoine Deleforge

Author · added in 2.3.1

Emilie Devijver

Author · added in 2.3.1

Florence Forbes

Author · added in 2.3.1

Melina Gallopin

Author · added in 2.3.1

Listed in earlier versions (5)

Antoine Deleforge (antoine.deleforge@inria.fr)

no longer listed · 1.0 to 2.3

Emeline Perthame (emeline.perthame@inria.fr)

no longer listed · 1.0 to 2.3

Florence Forbes (florence.forbes@inria.fr)

no longer listed · 1.0 to 2.3

Emilie Devijver (emilie.devijver@kuleuven.be)

no longer listed · 2.0 to 2.3

Melina Gallopin (melina.gallopin@u-psud.fr)

no longer listed · 2.0 to 2.3

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.3.1Latest
2026-03-02 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
2.3
2023-10-27 · diff ↗
2.2.1
2023-09-11 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.2
2021-01-04 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
2.1
2017-05-23 · diff ↗
2.0
2017-05-16 · diff ↗
R
R 3.4.0 released · 2017-04-21

Show 2 earlier events

1.0
2016-12-05
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2016-12-05
Total releases: 7 / 10 yrs
License: GPL (>= 2) OSI
Bundled data: 54 KB / 3 files
Download size: 92 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("xLLiM")

Format

Perthame, E., Deleforge, A., Devijver, E., Forbes, F., & Gallopin, M. (2026). xLLiM: High Dimensional Locally-Linear Mapping (Version 2.3.1) [Computer software]. https://doi.org/10.32614/CRAN.package.xLLiM

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for xLLiM version 2.3.1 [Data set]. HJJB, LLC. Data release v2026-08-23. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-23, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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