R Observatory: Metrics for wrMisc version 2.1.1

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

wrMisc

2.1.1Package record

Analyze Experimental High-Throughput (Omics) Data

3packages depend

16.6Kdownloads / year

–test coverage

13/13flavors OK

Overview

About

Maintained by Wolfgang RaffelsbergerCRAN page ↗

The efficient treatment and convenient analysis of experimental high-throughput (omics) data gets facilitated through this collection of diverse functions. Several functions address advanced object-conversions, like manipulating lists of lists or lists of arrays, reorganizing lists to arrays or into separate vectors, merging of multiple entries, etc. Another set of functions provides speed-optimized calculation of standard deviation (sd), coefficient of variance (CV) or standard error of the mean (SEM) for data in matrixes or means per line with respect to additional grouping (eg n groups of replicates). A group of functions facilitate dealing with non-redundant information, by indexing unique, adding counters to redundant or eliminating lines with respect redundancy in a given reference-column, etc. Help is provided to identify very closely matching numeric values to generate (partial) distance matrixes for very big data in a memory efficient manner or to reduce the complexity of large data-sets by combining very close values. Other functions help aligning a matrix or data.frame to a reference using partial matching or to mine an experimental setup to extract patterns of replicate samples. Many times large experimental datasets need some additional filtering, adequate functions are provided. Convenient data normalization is supported in various different modes, parameter estimation via permutations or boot-strap as well as flexible testing of multiple pair-wise combinations using the framework of 'limma' is provided, too. Batch reading (or writing) of sets of files and combining data to arrays is supported, too.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("wrMisc", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-wrmisc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled. We list this channel from recorded r2u download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-wrMisc

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-wrMisc

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed). We list this channel from recorded autoCRAN download activity rather than from a live index of the repository, so treat it as last known rather than guaranteed.

Health

CRAN checks

13OK

CRAN check page ↗

Slowest check: 5.9 min · r-oldrel-windows-x86_64

Status changes

OK13 OK2026-08-04
NOTE12 OK, 1 NOTE2026-08-01
OK12 OK, 1 FAILURE2026-06-08
ERROR12 OK, 1 ERROR2026-06-07
OK14 OK2026-03-10

Advisories

none known

How this is measured·How advisories are found

Documentation

In release 2.1.1

READMENoVignettesYes · 1 · dynamicNEWSNoCitation fileNoWebsitenot declared in DESCRIPTION

Help pages: 281
Examples that run: 100%281 run in a plain check
Exported functions with examples: 100%
Documented parameters: 99%
Return-value docs: 99%
Help pages citing references: 0%

Vignettes (1)

wrMiscVignette1

How these are measured

Downloads

16.6K

CRAN downloads in the past year

Rank #3,144 · ~46/day · ~1.4K/mo

Releases R versions

Daily download trend is not available in this view yet.

1.3K30 days

3.9K90 days

16.6K1 year

Compare downloads with other packages →

Also on469 r2u10 autocran794 conda_forge99 c2d4u

How downloads are counted

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Installing wrMisc adds no packages beyond those that come with R.

Depends (1)

R >= 3.1.0

Imports (5)

grDevicesgraphicsMASSstatsutils

LinkingTo (0)

none

Suggests (23)

BBmiscbootcoin data.table data.tree fdrtool flexclust knitr limma markdown mixdist NbClust preprocessCore qvalue Rcpp RColorBrewer readxl rmarkdown som stringi VGAM vsn wrGraph

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

3direct

0indirect

Imports 3

Depends, Imports or LinkingTo, most downloaded first

wrProteo wrGraph wrTopDownFrag

How these are counted

Code & Tests

Datasets

People & History

People (1)

Wolfgang Raffelsberger

Author, Maintainer since 1.0.4 (2019)

Releases (43)

Pick two releases to compare their code metrics.

2.1.1Latest
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2026-07-20 · current release · diff ↗ ·
added 1 export
truncateVect
2.1.0
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2026-06-08 · diff ↗ ·
added 4 exports
addBeforeFileExtension, blockNormalize, vectorDistAngle, volcanoFilter
2.0.2
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2026-04-29 · diff ↗ ·
added 4 exports
convPairwiseSetup, findHeadAndTail, getPairwiseSetup, pwSeparatorList
R
R 4.6.0 released · 2026-04-24
2.0.0
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2026-03-09 · diff ↗ ·
removed 1 export
.offCenter

added 4 exports
.getPWseparator, getPWseparator, indexGroupsFromPW, replacePWseparator
1.15.4
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2025-06-18 · diff ↗ ·
added 1 export
chooseGroupNames
R
R 4.5.0 released · 2025-04-11
1.15.3.1
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2025-04-01 · diff ↗ ·
added 2 exports
.doubleExt, top3mean
1.15.2
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2024-08-20 · diff ↗ ·
added 3 exports
colCVs, rmSharedWords, trimmedMean
1.15.1
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2024-07-22 · diff ↗ ·
added 1 export
rmOrphans
1.15.0.3
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2024-05-10 · diff ↗ ·
added 1 export
checkUnitPrefix
R
R 4.4.0 released · 2024-04-24
1.14.2
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2024-02-28 · diff ↗
1.14.1
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2024-02-14 · diff ↗ ·
added 1 export
combineRedundLinesInList
1.14.0
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2023-11-17 · diff ↗ ·
added 1 export
combineRedundLinesInListAcRef
1.13.0
record
2023-08-10 · diff ↗ ·
added 3 exports
adjustUnitPrefix, checkFilePath, concatMatch

Show 35 earlier eventsHide 35 earlier events

R
R 4.3.0 released · 2023-04-21
1.12.0
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2023-03-20 · diff ↗ ·
removed 5 exports
.addDatCol, .asSepListOld, .convColorToTransp, .identToMatr2, .transfTF2coord

added 3 exports
.cutStr, .uniqueWName, rmEnumeratorName
1.11.1
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2023-01-25 · diff ↗ ·
added 1 export
.asSepListOld
1.11.0
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2023-01-06 · diff ↗ ·
added 5 exports
.mergeMatrices, matchMatrixLinesToRef, mergeMatrices, mergeMatrixList, orderMatrToRef
1.10.2
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2022-11-02 · diff ↗ ·
added 1 export
unifyEnumerator
1.10.1
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2022-10-17 · diff ↗ ·
added 2 exports
.complCols, .rowNormFact
1.10.0
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2022-10-03 · diff ↗ ·
added 3 exports
.rowNorm, presenceGrpFilt, rowNormalize
1.9.2
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2022-07-07 · diff ↗ ·
added 5 exports
.rowGrpSums, combineAsN, confInt, rowGrpSums, sortByNRepeated
R
R 4.2.0 released · 2022-04-22
1.9.1
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2022-04-13 · diff ↗ ·
added 1 export
keepCommonText
1.9.0
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2022-03-25 · diff ↗ ·
added 6 exports
.trimLeft, .trimRight, packageDownloadStat, protectSpecChar, replicateStructure, trimRedundText
1.8.1
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2022-01-24 · diff ↗
1.8.0
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2021-12-14 · diff ↗ ·
added 2 exports
appendNR, pairsAsPropensMatr
1.7.0
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2021-10-28 · diff ↗ ·
added 4 exports
.filterNetw, filterNetw, gitDataUrl, readTabulatedBatch
1.6.2
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2021-09-16 · diff ↗
1.6.1
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2021-08-11 · diff ↗ ·
added 1 export
filterLiColDeList
1.6.0
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2021-06-04 · diff ↗ ·
added 6 exports
levIndex, multiCharReplace, multiMatch, rnormW, sampNoDeMArrayLM, sysDate
R
R 4.1.0 released · 2021-05-18
1.5.4
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2021-03-31 · diff ↗ ·
added 1 export
coordOfFilt
1.5.3
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2021-02-26 · diff ↗
1.5.2
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2021-02-09 · diff ↗ ·
added 2 exports
matchSampToPairw, rowGrpNA
1.5.1
record
2021-01-13 · diff ↗
1.5.0
record
2020-12-07 · diff ↗ ·
added 4 exports
mergeVectors, reorgByCluNo, scaleXY, standardW
1.4.2
record
2020-11-20 · diff ↗
1.4.1
record
2020-11-13 · diff ↗
1.4.0
record
2020-10-15 · diff ↗ ·
added 2 exports
linModelSelect, numPairDeColNames
1.3.1
record
2020-09-18 · diff ↗ ·
removed 1 export
.filterMinAv

added 1 export
sumNAperGroup
1.3.0
record
2020-07-24 · diff ↗ ·
added 2 exports
combinatIntTable, correctWinPath
1.2.4
record
2020-07-03 · diff ↗
1.2.3
record
2020-06-16 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.2.0
record
2020-04-23 · diff ↗ ·
removed 1 export
.transpGraySca

added 8 exports
convColorToTransp, extrColsDeX, filterList, linRegrParamAndPVal, matchNamesWithReverseParts, rankToContigTab, readVarColumns, transpGraySca
1.1.0
record
2019-12-09 · diff ↗ ·
added 1 export
getValuesByUnique
1.0.4
record
2019-11-04
R
R 3.6.0 released · 2019-04-26

Package metadata

First published: 2019-11-04
Total releases: 43 / 7 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.1.0
Download size: 858 KB

Appears in task views

Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("wrMisc")

Format

Raffelsberger, W. (2026). wrMisc: Analyze Experimental High-Throughput (Omics) Data (Version 2.1.1) [Computer software]. https://doi.org/10.32614/CRAN.package.wrMisc

This package has no citation file, so citation() returns this entry built from DESCRIPTION.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for wrMisc version 2.1.1 [Data set]. HJJB, LLC. Data release v2026-10-18. https://doi.org/10.5281/zenodo.21843040

From data release v2026-10-18, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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